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(-) Description

Title :  X-RAY STRUCTURE OF A DAP-KINASE CALMODULIN COMPLEX
 
Authors :  J. Kuper, I. De Diego, F. Lehmann, M. Wilmanns
Date :  08 Dec 09  (Deposition) - 26 Jan 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase-Signaling Protein Complex, Transferase Signaling Protein Complex, Phosphoprotein, Calmodulin-Binding, Dapk, Kinase, Ank Repeat, Calmodulin, Transferase, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. De Diego, J. Kuper, N. Bakalova, P. Kursula, M. Wilmanns
Molecular Basis Of The Death-Associated Protein Kinase-Calcium/Calmodulin Regulator Complex.
Sci. Signal V. 3 Ra6 2010
PubMed-ID: 20103772  |  Reference-DOI: 10.1126/SCISIGNAL.2000552

(-) Compounds

Molecule 1 - DEATH-ASSOCIATED PROTEIN KINASE 1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETM11
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentCATALYTIC AND AUTOINHIBITORY DOMAIN, RESIDUES 1- 334
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDAP KINASE 1
 
Molecule 2 - CALMODULIN
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETM8A
    Expression System StrainBL21
    Expression System Taxid511693
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:93 , ASP B:95 , ASN B:97 , TYR B:99 , GLU B:104BINDING SITE FOR RESIDUE CA B1146
2AC2SOFTWAREASP B:129 , ASP B:131 , ASP B:133 , GLN B:135 , GLU B:140 , HOH B:2021BINDING SITE FOR RESIDUE CA B1147
3AC3SOFTWAREASP B:20 , ASP B:22 , ASP B:24 , THR B:26 , GLU B:31 , HOH B:2003BINDING SITE FOR RESIDUE CA B1148
4AC4SOFTWAREASP B:56 , ASP B:58 , ASN B:60 , THR B:62 , GLU B:67BINDING SITE FOR RESIDUE CA B1149
5AC5SOFTWAREARG A:47 , LYS A:50 , SER A:57 , ARG A:58 , HOH A:2150BINDING SITE FOR RESIDUE SO4 A1321
6AC6SOFTWAREARG A:63 , HIS A:166 , ASN A:172 , HOH A:2151BINDING SITE FOR RESIDUE SO4 A1322

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X0G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2X0G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (15, 15)

Asymmetric/Biological Unit (15, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_069222N54ICALM1_HUMANDisease (CPVT4)267607276BN53I
02UniProtVAR_073275F90LCALM1_HUMANDisease (LQT14)730882253BF89L
03UniProtVAR_073276D96VCALM2_HUMANDisease (LQT15)730882254BD95V
04UniProtVAR_073277N98ICALM2_HUMANDisease (LQT15)398124647BN97I
05UniProtVAR_078541N98SCALM1_HUMANDisease (CPVT4)398124647BN97S
06UniProtVAR_078543N98SCALM2_HUMANDisease (LQT15)398124647BN97S
07UniProtVAR_078261A103VCALM3_HUMANDisease  ---BA102V
08UniProtVAR_078542D130GCALM1_HUMANDisease (LQT14)730882252BD129G
09UniProtVAR_078544D130GCALM2_HUMANDisease (LQT15)730882252BD129G
10UniProtVAR_078262D130VCALM2_HUMANDisease (LQT15)  ---BD129V
11UniProtVAR_073279D132ECALM2_HUMANDisease (LQT15)398124648BD131E
12UniProtVAR_073280D134HCALM2_HUMANDisease (LQT15)398124650BD133H
13UniProtVAR_073281Q136PCALM2_HUMANDisease (LQT15)398124649BQ135P
14UniProtVAR_078263E141GCALM1_HUMANDisease (LQT14)  ---BE140G
15UniProtVAR_073282F142LCALM1_HUMANDisease (LQT14)11551462BF141L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 10)

Asymmetric/Biological Unit (4, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM1_HUMAN8-43
44-79
81-116
117-149
  4B:7-42
B:43-73
B:82-115
B:116-145
CALM2_HUMAN8-43
44-79
81-116
117-149
  4B:7-42
B:43-73
B:82-115
B:116-145
CALM3_HUMAN8-43
44-79
81-116
117-149
  4B:7-42
B:43-73
B:82-115
B:116-145
2PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.DAPK1_HUMAN19-46  1A:19-46
3EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM1_HUMAN21-33
57-69
94-106
130-142
  4B:20-32
B:56-68
B:93-105
B:129-141
CALM2_HUMAN21-33
57-69
94-106
130-142
  4B:20-32
B:56-68
B:93-105
B:129-141
CALM3_HUMAN21-33
57-69
94-106
130-142
  4B:20-32
B:56-68
B:93-105
B:129-141
4PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.DAPK1_HUMAN135-147  1A:135-147

(-) Exons   (10, 10)

Asymmetric/Biological Unit (10, 10)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003580771ENSE00001835417chr9:90112143-9011221775DAPK1_HUMAN-00--
1.4aENST000003580774aENSE00002143630chr9:90113885-90114054170DAPK1_HUMAN1-21211A:3-2119
1.6ENST000003580776ENSE00001585224chr9:90219869-90220090222DAPK1_HUMAN21-95751A:21-9575
1.7bENST000003580777bENSE00001584756chr9:90252858-90252996139DAPK1_HUMAN95-141471A:95-14147
1.8aENST000003580778aENSE00001581455chr9:90254269-90254398130DAPK1_HUMAN142-185441A:142-18544
1.9aENST000003580779aENSE00001579437chr9:90254565-9025461349DAPK1_HUMAN185-201171A:185-20117
1.9cENST000003580779cENSE00001582629chr9:90254704-9025473027DAPK1_HUMAN201-210101A:201-21010
1.10bENST0000035807710bENSE00001578538chr9:90255213-90255365153DAPK1_HUMAN210-261521A:210-26152
1.11ENST0000035807711ENSE00001589379chr9:90255717-9025576246DAPK1_HUMAN261-276161A:261-27616
1.12ENST0000035807712ENSE00001582911chr9:90256884-9025697390DAPK1_HUMAN277-306301A:277-30630
1.13ENST0000035807713ENSE00001586474chr9:90258291-9025838393DAPK1_HUMAN307-337311A:307-32014
1.14ENST0000035807714ENSE00001576625chr9:90260810-90260929120DAPK1_HUMAN338-377400--
1.15ENST0000035807715ENSE00001578552chr9:90261376-9026147499DAPK1_HUMAN378-410330--
1.16ENST0000035807716ENSE00001582147chr9:90262220-9026231899DAPK1_HUMAN411-443330--
1.17cENST0000035807717cENSE00001578139chr9:90263696-9026379499DAPK1_HUMAN444-476330--
1.18aENST0000035807718aENSE00001585930chr9:90264836-90265033198DAPK1_HUMAN477-542660--
1.19bENST0000035807719bENSE00001585105chr9:90266442-90266639198DAPK1_HUMAN543-608660--
1.20bENST0000035807720bENSE00001579962chr9:90272944-9027304299DAPK1_HUMAN609-641330--
1.22bENST0000035807722bENSE00001583161chr9:90283512-9028358978DAPK1_HUMAN642-667260--
1.23bENST0000035807723bENSE00001583090chr9:90296319-90296541223DAPK1_HUMAN668-742750--
1.24ENST0000035807724ENSE00001581009chr9:90301466-90301654189DAPK1_HUMAN742-805640--
1.25ENST0000035807725ENSE00001580571chr9:90311922-90312119198DAPK1_HUMAN805-871670--
1.26bENST0000035807726bENSE00001588489chr9:90313571-90313709139DAPK1_HUMAN871-917470--
1.27bENST0000035807727bENSE00001583431chr9:90315032-90315152121DAPK1_HUMAN917-957410--
1.28ENST0000035807728ENSE00001586524chr9:90317944-90318132189DAPK1_HUMAN958-1020630--
1.29eENST0000035807729eENSE00001905075chr9:90321047-903235462500DAPK1_HUMAN1021-14304100--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:318
 aligned with DAPK1_HUMAN | P53355 from UniProtKB/Swiss-Prot  Length:1430

    Alignment length:318
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312        
          DAPK1_HUMAN     3 VFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKASAVNMEKFKKFAARKKWKQSVRLISLCQRLSR 320
               SCOP domains d2x0ga_ A: automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------2x0gA01 A:9-95 Phosphorylase Kinase; domain 1                                          2x0gA02 A:96-320 Transferase(Phosphotransferase) domain 1                                                                                                                                                                         CATH domains
               Pfam domains ----------Pkinase-2x0gA01 A:13-275                                                                                                                                                                                                                                               --------------------------------------------- Pfam domains
         Sec.struct. author .....hhhh.eeeeeeeee...eeeeeeee.....eeeeeeee...........hhhhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.........eee......ee............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhh..hhhhhhhhhh..........hhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ----------------PROTEIN_KINASE_ATP          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (6)
                PROSITE (7) ------------------------------------------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (7)
           Transcript 1 (1) Exon 1.4a          -------------------------------------------------------------------------Exon 1.7b  PDB: A:95-141 UniProt: 95-141       Exon 1.8a  PDB: A:142-185 UniProt: 142-185  ------------------------Exon 1.10b  PDB: A:210-261 UniProt: 210-261         ---------------Exon 1.12  PDB: A:277-306     Exon 1.13      Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: A:21-95 UniProt: 21-95                                      -----------------------------------------------------------------------------------------Exon 1.9a        -----------------------------------------------------------Exon 1.11       -------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9c -------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 2x0g A   3 VFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKASAVNMEKFKKFAARKKWKQSVRLISLCQRLSR 320
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312        

Chain B from PDB  Type:PROTEIN  Length:132
 aligned with CALM1_HUMAN | P0DP23 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:140
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
          CALM1_HUMAN     7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
               SCOP domains d2x0gb_ B: Calmodulin                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhh..--------hhhhhhhhhhhh.....eehhhhhhhhhhh.....hhhhhhhhhhhhh......eehhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------S-------------------------------G---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------S-------------------------------V---------------- SAPs(SNPs) (3)
                PROSITE (2) -EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-73             -EF_HAND_2  PDB: B:82-115            EF_HAND_2  PDB: B:116-145      PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ---- PROSITE (5)
                PROSITE (6) --------------EF_HAND_1    ----------------------------------------------------------------------------------------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0g B   6 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA--------EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
                                    15        25        35        45        55        65       | -      | 85        95       105       115       125       135       145
                                                                                              73       82                                                               

Chain B from PDB  Type:PROTEIN  Length:132
 aligned with CALM2_HUMAN | P0DP24 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:140
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
          CALM2_HUMAN     7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
               SCOP domains d2x0gb_ B: Calmodulin                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhh..--------hhhhhhhhhhhh.....eehhhhhhhhhhh.....hhhhhhhhhhhhh......eehhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------S-------------------------------G---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------S-------------------------------V---------------- SAPs(SNPs) (3)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-73             -EF_HAND_2  PDB: B:82-115            EF_HAND_2  PDB: B:116-145      PROSITE (3)
                PROSITE (4) --------------------------------------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ---- PROSITE (4)
                PROSITE (5) --------------EF_HAND_1    ----------------------------------------------------------------------------------------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0g B   6 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA--------EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
                                    15        25        35        45        55        65       | -      | 85        95       105       115       125       135       145
                                                                                              73       82                                                               

Chain B from PDB  Type:PROTEIN  Length:132
 aligned with CALM3_HUMAN | P0DP25 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:140
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
          CALM3_HUMAN     7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
               SCOP domains d2x0gb_ B: Calmodulin                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhh..--------hhhhhhhhhhhh.....eehhhhhhhhhhh.....hhhhhhhhhhhhh......eehhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------I-----------------------------------L-----V-I----V--------------------------G-E-H-P----GL---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------S-------------------------------G---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------S-------------------------------V---------------- SAPs(SNPs) (3)
                PROSITE (1) -EF_HAND_2  PDB: B:7-42 UniProt: 8-43EF_HAND_2  PDB: B:43-73             -EF_HAND_2  PDB: B:82-115            EF_HAND_2  PDB: B:116-145      PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ---- PROSITE (6)
                PROSITE (7) --------------EF_HAND_1    ----------------------------------------------------------------------------------------------------------------- PROSITE (7)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x0g B   6 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA--------EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
                                    15        25        35        45        55        65       | -      | 85        95       105       115       125       135       145
                                                                                              73       82                                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (110, 114)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (DAPK1_HUMAN | P53355)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0004683    calmodulin-dependent protein kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate. These reactions require the presence of calcium-bound calmodulin.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0017075    syntaxin-1 binding    Interacting selectively and non-covalently with the SNAP receptor syntaxin-1.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0097190    apoptotic signaling pathway    A series of molecular signals which triggers the apoptotic death of a cell. The pathway starts with reception of a signal, and ends when the execution phase of apoptosis is triggered.
    GO:0071346    cellular response to interferon-gamma    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon gamma is the only member of the type II interferon found so far.
    GO:0008625    extrinsic apoptotic signaling pathway via death domain receptors    A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with a ligand binding to a death domain receptor on the cell surface, and ends when the execution phase of apoptosis is triggered.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:1902042    negative regulation of extrinsic apoptotic signaling pathway via death domain receptors    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
    GO:0017148    negative regulation of translation    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0043280    positive regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:2000310    regulation of NMDA receptor activity    Any process that modulates the frequency, rate or extent of N-methyl-D-aspartate selective glutamate receptor activity.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
    GO:0010506    regulation of autophagy    Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
    GO:0006417    regulation of translation    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B   (CALM2_HUMAN | P0DP24)

Chain B   (CALM3_HUMAN | P0DP25)

Chain B   (CALM1_HUMAN | P0DP23)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_HUMAN | P0DP231aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1wrz 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2i08 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2l7l 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3evv 3ewt 3ewv 3g43 3hr4 3j41 3o77 3o78 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM2_HUMAN | P0DP241aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        CALM3_HUMAN | P0DP251aji 1cdl 1cll 1cm1 1cm4 1ctr 1deg 1iwq 1j7o 1j7p 1k90 1k93 1l7z 1lvc 1nkf 1pk0 1qiv 1qiw 1s26 1sk6 1sw8 1up5 1xfu 1xfv 1xfw 1xfx 1xfy 1xfz 1y6w 1yr5 1yrt 1yru 1zot 1zuz 2be6 2f3y 2f3z 2hf5 2jzi 2k0e 2k0f 2k0j 2k61 2kne 2kug 2kuh 2l53 2lgf 2ll6 2ll7 2lqc 2lqp 2lv6 2m0j 2m0k 2m55 2mg5 2n27 2n6a 2n77 2n8j 2r28 2v01 2v02 2vay 2w73 2wel 2y4v 3bya 3cln 3dve 3dvj 3dvk 3dvm 3ewt 3ewv 3g43 3hr4 3j41 3oxq 3sui 3uct 3ucw 3ucy 4bw7 4bw8 4byf 4dck 4djc 4gow 4jpz 4jq0 4l79 4lzx 4m1l 4ovn 4q57 4q5u 4umo 4upu 4v0c 5coc 5dbr 5dow 5dsu 5ggm 5i0i 5j03 5j8h 5k7l 5k8q 5vms 5wsu 5wsv
        DAPK1_HUMAN | P533551ig1 1jkk 1jkl 1jks 1jkt 1p4f 1wvw 1wvx 1wvy 1yr5 2w4j 2w4k 2xuu 2xzs 2y0a 2y4p 2y4v 2yak 3dfc 3dgk 3eh9 3eha 3f5g 3f5u 3gu4 3gu5 3gu6 3gu7 3gu8 3gub 3zxt 4b4l 4pf4 4tl0 4txc 4uv0 4yo4 4ypd 5aut 5auu 5auv 5auw 5aux 5auy 5auz 5av0 5av1 5av2 5av3 5av4

(-) Related Entries Specified in the PDB File

1aji APO-CALMODULIN IN COMPLEX WITH BRUSH BORDER MYOSIN I IQ MOTIF, THEORETICAL MODEL
1cdl CALMODULIN COMPLEXED WITH CALMODULIN-BINDING PEPTIDE FROM SMOOTH MUSCLE MYOSIN LIGHT CHAIN KINASE
1cll CALMODULIN (VERTEBRATE)
1ctr CALMODULIN COMPLEXED WITH TRIFLUOPERAZINE (1:1 COMPLEX)
1ig1 1.8A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MN.
1iwq CRYSTAL STRUCTURE OF MARCKS CALMODULIN BINDING DOMAINPEPTIDE COMPLEXED WITH CA2+/CALMODULIN
1j7o SOLUTION STRUCTURE OF CALCIUM-CALMODULIN N- TERMINAL DOMAIN
1j7p SOLUTION STRUCTURE OF CALCIUM CALMODULIN C- TERMINAL DOMAIN
1jkk 2.4A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MG.
1jkl 1.6A X-RAY STRUCTURE OF BINARY COMPLEX OF A CATALYTICDOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE WITH ATP ANALOGUE
1jks 1.5A X-RAY STRUCTURE OF APO FORM OF A CATALYTIC DOMAIN OFDEATH-ASSOCIATED PROTEIN KINASE
1jkt TETRAGONAL CRYSTAL FORM OF A CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE
1k90 CRYSTAL STRUCTURE OF THE EDEMA FACTOR WITH CALMODULIN AND3'-DATP
1k93 CRYSTAL STRUCTURE OF EDEMA FACTOR COMPLEXED WITH CALMODULIN
1lvc CRYSTAL STRUCTURE OF EF-CAM COMPLEXED WITH 3'-ANT-2'-DATP
1nkf CALCIUM-BINDING PEPTIDE, NMR, 30 STRUCTURES
1p4f DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH BOUNDINHIBITOR FRAGMENT
1pk0 CRYSTAL STRUCTURE OF THE EF3-CAM COMPLEXED WITH PMEAPP
1s26 STRUCTURE OF ANTHRAX EDEMA FACTOR-CALMODULIN- ALPHA,BETA-METHYLENEADENOSINE 5'-TRIPHOSPHATE COMPLEX REVEALS ANALTERNATIVE MODE OF ATP BINDING TO THE CATALYTIC SITE
1sk6 CRYSTAL STRUCTURE OF THE EF3/CALMODULIN COMPLEXED WITHCAMP/PYROPHOSPHATE
1sw8 SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN N60DCALMODULIN REFINED WITH PARAMAGNETISM BASED STRATEGY
1wrz CALMODULIN COMPLEXED WITH A PEPTIDE FROM A HUMAN DEATH-ASSOCIATED PROTEIN KINASE
1xfu CRYSTAL STRUCTURE OF FULL-EF-DELTA64 COMPLEX WITH CAM
1xfv FULL LENTH EF COMPLEXED CAM AND 3'-DEOXY- ATP
1xfw CRYSTAL STRUCTURE OF FULL-EF-CAM COMPLEXED WITH CAMP
1xfx CRYSTAL STRUCTURE OF FULL-EF-CAM COMPLEX AT 10 MM CALCIUM
1xfy CRYSTAL STRUCTURE OF FULLEF-CAM WITH 1 UM CALCIUM
1xfz CRYSTAL STRUCTURE OF FULLEF-CAM WITH 1 MM CALCIUM
1y6w TRAPPED INTERMEDIATE OF CALMODULIN
1yrt CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAESCATALYTIC DOMAIN OF ADENYLYL CYCLASE TOXIN OF BORDETELLAPERTUSSIS IN PRESENCE OF C-TERMINAL CALMODULIN
1yru CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAESCATALYTIC DOMAIN OF ADENYLYL CYCLASE TOXIN OF BORDETELLAPERTUSSIS IN PRESENCE OF C-TERMINAL CALMODULIN AND 1MMCALCIUM CHLORIDE
1zot CRYSTAL STRUCTURE ANALYSIS OF THE CYAA/C- CAM WITH PMEAPP
2be6 2.0 A CRYSTAL STRUCTURE OF THE CAV1.2 IQ DOMAIN-CA/CAMCOMPLEX
2f3y CALMODULIN/IQ DOMAIN COMPLEX
2f3z CALMODULIN/IQ-AA DOMAIN COMPLEX
2v01 RECOMBINANT VERTEBRATE CALMODULIN COMPLEXED WITH PB
2v02 RECOMBINANT VERTEBRATE CALMODULIN COMPLEXED WITH BA
2vay CALMODULIN COMPLEXED WITH CAV1.1 IQ PEPTIDE
2w4j X-RAY STRUCTURE OF A DAP-KINASE 2-277
2w4k X-RAY STRUCTURE OF A DAP-KINASE 2-302
2w73 HIGH-RESOLUTION STRUCTURE OF THE COMPLEX BETWEEN CALMODULIN AND A PEPTIDE FROM CALCINEURIN A
2wel CRYSTAL STRUCTURE OF SU6656-BOUND CALCIUM/ CALMODULIN-DEPENDENT PROTEIN KINASE II DELTA IN COMPLEX WITH CALMODULIN