Chain A from PDB Type:PROTEIN Length:226
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:228
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
GFP_AEQVI 1 MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAG 228
SCOP domains d1jc0a_ A: Green fluorescent protein, GFP SCOP domains
CATH domains 1jc0A00 A:1-228 Green Fluorescent Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .hhhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee.......hhhhhh...--.hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I--------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1jc0 A 1 MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFISTTGKLPVPWPTLVTTL--gVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNCHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTCSALSKDPNEKRDHMVLLEFVTAAG 228
10 20 30 40 50 60 | ||70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
64 ||
66-CRO
68
Chain B from PDB Type:PROTEIN Length:226
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:228
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
GFP_AEQVI 1 MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAG 228
SCOP domains d1jc0b_ B: Green fluorescent protein, GFP SCOP domains
CATH domains 1jc0B00 B:1-228 Green Fluorescent Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..hhhhhh...eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhhhh..--.hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I--------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1jc0 B 1 MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFISTTGKLPVPWPTLVTTL--gVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNCHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTCSALSKDPNEKRDHMVLLEFVTAAG 228
10 20 30 40 50 60 | ||70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
64 ||
66-CRO
68
Chain C from PDB Type:PROTEIN Length:226
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:228
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221
GFP_AEQVI 2 SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGI 229
SCOP domains d1jc0c_ C: Green fluorescent protein, GFP SCOP domains
CATH domains 1jc0C00 C:2-229 Green Fluorescent Protein CATH domains
Pfam domains (1) ---GFP-1jc0C01 C:5-229 Pfam domains (1)
Pfam domains (2) ---GFP-1jc0C02 C:5-229 Pfam domains (2)
Pfam domains (3) ---GFP-1jc0C03 C:5-229 Pfam domains (3)
Sec.struct. author .hhhhhhh..eeeeeeeeeee..eeeeeeeeeeeehhh.eeeeeeee.......hhhhhh...--.hhhhh....hhhhhhhhhhh....eeeeeeeee....eeeeeeeeee....eeeeeeeeee...................eeeeeee......eeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I---------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1jc0 C 2 SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFISTTGKLPVPWPTLVTTL--gVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNCHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTCSALSKDPNEKRDHMVLLEFVTAAGI 229
11 21 31 41 51 61 | || 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221
64 ||
66-CRO
68
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |