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(-) Description

Title :  THE CRYOEM STRUCTURE OF HUMAN GAMMA-SECRETASE COMPLEX
 
Authors :  L. Sun, L. Zhao, G. Yang, C. Yan, R. Zhou, X. Zhou, T. Xie, Y. Zhao, S. Wu, X
Date :  03 Apr 15  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.40
Chains :  Asym./Biol. Unit :  A,B,C,D,G
Keywords :  Hydrolase, Gamma-Secretase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sun, L. Zhao, G. Yang, C. Yan, R. Zhou, X. Zhou, T. Xie, Y. Zhao, S. Wu, X. Li, Y. Shi
Structural Basis Of Human Gamma-Secretase Assembly.
Proc. Natl. Acad. Sci. Usa V. 112 6003 2015
PubMed-ID: 25918421  |  Reference-DOI: 10.1073/PNAS.1506242112

(-) Compounds

Molecule 1 - GAMMA-SECRETASE
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293S
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - GAMMA-SECRETASE
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293S
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - GAMMA-SECRETASE
    Chains: C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293S
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - GAMMA-SECRETASE
    Chains: D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293S
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 5 - LYSOZYME
    Chains: G
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293S
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 458)

Asymmetric/Biological Unit (1, 458)
No.NameCountTypeFull Name
1UNK458Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 4UIS)

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:50 -A:62
2A:195 -A:213
3A:230 -A:248

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1His A:158 -Cys A:159
2Asn A:204 -Gly A:205
3Gly A:205 -Ser A:206
4Ala A:207 -Pro A:208
5Unk C:139 -Unk C:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UIS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UIS)

(-) Exons   (0, 0)

(no "Exon" information available for 4UIS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:588
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....ee....ee........eeeee....hhhhhhhhhh......ee........hhhhhhhhhh.......eeee..............................................eeee.hhhhhhhhhhhhhhhhh...........eeeeee.......hhhhhhhh......eee..eee...........eee..ee................hhhhhhhhhhhhhhhhhhhhhhh...eee..ee......hhhhhhhhhhhhh...............ee.................hhhhhhhhhhhhhhhhh..............hhhhhhh........ee................hhhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.hhhhh..................hhhhhhhhhhhhhhh..........hhhhhhhh....ee............ee......eee................eee.....eeeeee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uis A  42 IPLNKTAPCVRLLNATHQIGCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAGLAVSLTKPSPASGFSPSVQCPNDGFGVYHCREIQWNSLGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIAAVCDPLSDYNVWSMLKPIADDVVVAATRLDSRSFAWNVAPGAESAVASFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVDSFVELGQVALRTSLELWMHTDPVQKNESVRNQVEDLGAGVPAVILRSGVPLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLAPEEDLNFVTDTAKALADVATVLGRALYELAGGDTVQADPQTVTRLLYGFLIKLRQDLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTARLARALSPAQWSSTEYSTWTESRWKAIRARIFLIASxxxxxxxxxxxxxxxxxxxxxxx 688
                                    51        61        71        81        91       101       111       121       131       141      |160       170       180       190       200       210       220       230     ||248       258    || 276       286       296       306       316       326       336       346       356       366       376      |394       404       414|      427       437       447       457       467       477       487       497      |511       521      |540       550       560       570       581|||||||592|||||||607|||||||619|||||||629       640       650       660     ||670|||||||680||||||||
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Chain B from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uis B  69 xxxxxxxxxxxxHVIMLFVPVTLCMVVVVATIxxxxxxxxxxxxxxxxxxxxxxxxxxxLLLFFFSFIYLGEVFKTYxxxxxxxxxxLIWNFGxxxxxxxxxxxxxRLQQAYLIMISALMxxxxxxxxxxxxxxxxxxxxDxxxxxxxxxxxxxxxxxxxxDxxxxxxxxxxxxxxxxxxWNTTIACFVAILIGLCLTLLxxxxxxxxxxxxxxxxxGLVFYFATDYLVQPFADQLAFHxx 465
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Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uis C   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 222
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Chain D from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 4uis D   5 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  75
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Chain G from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhh....eee.....eee...eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uis G   1 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UIS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UIS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UIS)

(-) Gene Ontology  (149, 170)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ala A:207 - Pro A:208   [ RasMol ]  
    Asn A:204 - Gly A:205   [ RasMol ]  
    Gly A:205 - Ser A:206   [ RasMol ]  
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  4uis
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  NICA_HUMAN | Q92542
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D9IEF7_BPT4 | D9IEF7: 4s0w 5ndd 5ndz 5t1a 5v83 5v86 5v88 5vba 5xez 5xf1
        NICA_HUMAN | Q92542: 2n7q 2n7r 5a63 5fn2 5fn3 5fn4 5fn5
        PSN1_HUMAN | P49768: 2kr6 5a63 5fn2 5fn3 5fn4 5fn5
UniProtKB/TrEMBL
        D9IEF7_BPT4 | D9IEF7: 4pjz 4pk0 4pla 4qkx 4u15 4u16 4xsj 4yc4 5bz6 5i0n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4UIS)