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5VIY
Asym. Unit
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Asym.Unit (1019 KB)
Biol.Unit 1 (995 KB)
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(1)
Title
:
BG505 SOSIP.664 IN COMPLEX WITH BROADLY NEUTRALIZING ANTIBODIES BG1 AND 8ANC195
Authors
:
H. Wang, P. J. Bjorkman
Date
:
17 Apr 17 (Deposition) - 21 Jun 17 (Release) - 21 Jun 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
6.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Hiv-1 Env, Broadly Neutralizing Antibodies, Cryo-Em, Single Particle Analysis, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wang, H. B. Gristick, L. Scharf, A. P. West, R. P. Galimidi, M. S. Seaman, N. T. Freund, M. C. Nussenzweig, P. J. Bjorkman
Asymmetric Recognition Of Hiv-1 Envelope Trimer By V1V2 Loop-Targeting Antibodies.
Elife V. 6 2017
[
close entry info
]
Hetero Components
(4, 163)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
1q: BETA-D-MANNOSE (BMAq)
1r: BETA-D-MANNOSE (BMAr)
1s: BETA-D-MANNOSE (BMAs)
1t: BETA-D-MANNOSE (BMAt)
1u: BETA-D-MANNOSE (BMAu)
1v: BETA-D-MANNOSE (BMAv)
1w: BETA-D-MANNOSE (BMAw)
1x: BETA-D-MANNOSE (BMAx)
1y: BETA-D-MANNOSE (BMAy)
2a: ALPHA-L-FUCOSE (FUCa)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3ab: ALPHA-D-MANNOSE (MANab)
3ac: ALPHA-D-MANNOSE (MANac)
3ad: ALPHA-D-MANNOSE (MANad)
3ae: ALPHA-D-MANNOSE (MANae)
3af: ALPHA-D-MANNOSE (MANaf)
3ag: ALPHA-D-MANNOSE (MANag)
3ah: ALPHA-D-MANNOSE (MANah)
3ai: ALPHA-D-MANNOSE (MANai)
3aj: ALPHA-D-MANNOSE (MANaj)
3ak: ALPHA-D-MANNOSE (MANak)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
4aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
4ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
4al: N-ACETYL-D-GLUCOSAMINE (NAGal)
4am: N-ACETYL-D-GLUCOSAMINE (NAGam)
4an: N-ACETYL-D-GLUCOSAMINE (NAGan)
4ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
4ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
4aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
4ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
4as: N-ACETYL-D-GLUCOSAMINE (NAGas)
4at: N-ACETYL-D-GLUCOSAMINE (NAGat)
4au: N-ACETYL-D-GLUCOSAMINE (NAGau)
4av: N-ACETYL-D-GLUCOSAMINE (NAGav)
4aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
4ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
4ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
4az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
4bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
4bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
4bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
4be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
4bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
4bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
4bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
4bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
4bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
4bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
4bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
4bm: N-ACETYL-D-GLUCOSAMINE (NAGbm)
4bn: N-ACETYL-D-GLUCOSAMINE (NAGbn)
4bo: N-ACETYL-D-GLUCOSAMINE (NAGbo)
4bp: N-ACETYL-D-GLUCOSAMINE (NAGbp)
4bq: N-ACETYL-D-GLUCOSAMINE (NAGbq)
4br: N-ACETYL-D-GLUCOSAMINE (NAGbr)
4bs: N-ACETYL-D-GLUCOSAMINE (NAGbs)
4bt: N-ACETYL-D-GLUCOSAMINE (NAGbt)
4bu: N-ACETYL-D-GLUCOSAMINE (NAGbu)
4bv: N-ACETYL-D-GLUCOSAMINE (NAGbv)
4bw: N-ACETYL-D-GLUCOSAMINE (NAGbw)
4bx: N-ACETYL-D-GLUCOSAMINE (NAGbx)
4by: N-ACETYL-D-GLUCOSAMINE (NAGby)
4bz: N-ACETYL-D-GLUCOSAMINE (NAGbz)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4ca: N-ACETYL-D-GLUCOSAMINE (NAGca)
4cb: N-ACETYL-D-GLUCOSAMINE (NAGcb)
4cc: N-ACETYL-D-GLUCOSAMINE (NAGcc)
4cd: N-ACETYL-D-GLUCOSAMINE (NAGcd)
4ce: N-ACETYL-D-GLUCOSAMINE (NAGce)
4cf: N-ACETYL-D-GLUCOSAMINE (NAGcf)
4cg: N-ACETYL-D-GLUCOSAMINE (NAGcg)
4ch: N-ACETYL-D-GLUCOSAMINE (NAGch)
4ci: N-ACETYL-D-GLUCOSAMINE (NAGci)
4cj: N-ACETYL-D-GLUCOSAMINE (NAGcj)
4ck: N-ACETYL-D-GLUCOSAMINE (NAGck)
4cl: N-ACETYL-D-GLUCOSAMINE (NAGcl)
4cm: N-ACETYL-D-GLUCOSAMINE (NAGcm)
4cn: N-ACETYL-D-GLUCOSAMINE (NAGcn)
4co: N-ACETYL-D-GLUCOSAMINE (NAGco)
4cp: N-ACETYL-D-GLUCOSAMINE (NAGcp)
4cq: N-ACETYL-D-GLUCOSAMINE (NAGcq)
4cr: N-ACETYL-D-GLUCOSAMINE (NAGcr)
4cs: N-ACETYL-D-GLUCOSAMINE (NAGcs)
4ct: N-ACETYL-D-GLUCOSAMINE (NAGct)
4cu: N-ACETYL-D-GLUCOSAMINE (NAGcu)
4cv: N-ACETYL-D-GLUCOSAMINE (NAGcv)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
25
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
37
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
100
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(57, 57)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:611 , TRP A:614
binding site for Mono-Saccharide NAG A 701 bound to ASN A 611
02
AC2
SOFTWARE
SER A:636 , ASN A:637 , ASN N:31 , ALA N:52
binding site for Poly-Saccharide residues NAG A 702 through MAN A 706 bound to ASN A 637
03
AC3
SOFTWARE
ASN B:611 , TRP B:614
binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
04
AC4
SOFTWARE
SER B:636 , ASN B:637 , ASN L:31 , ALA L:52
binding site for Poly-Saccharide residues NAG B 702 through MAN B 706 bound to ASN B 637
05
AC5
SOFTWARE
ASN C:611 , TRP C:614
binding site for Mono-Saccharide NAG C 701 bound to ASN C 611
06
AC6
SOFTWARE
SER C:636 , ASN C:637 , ASN P:31 , ALA P:52
binding site for Poly-Saccharide residues NAG C 702 through MAN C 706 bound to ASN C 637
07
AC7
SOFTWARE
GLY B:527 , GLU D:87 , ASN D:88
binding site for Poly-Saccharide residues NAG D 601 through NAG D 602 bound to ASN D 88
08
AC8
SOFTWARE
ASN D:133
binding site for Mono-Saccharide NAG D 603 bound to ASN D 133
09
AC9
SOFTWARE
ASN D:156 , TYR D:173 , TYR J:28 , TYR J:107
binding site for Poly-Saccharide residues NAG D 604 through MAN D 608 bound to ASN D 156
10
AD1
SOFTWARE
GLN D:130 , ASN D:160 , LYS D:171 , HIS I:92 , SER I:93 , PRO I:94 , ALA J:55 , GLN J:61 , GLN J:111 , GLU J:112 , GLY J:113 , GLY J:115 , TYR J:116
binding site for Poly-Saccharide residues PHE J 114 through MAN J 1605 bound to ASN D 160
11
AD2
SOFTWARE
ARG D:192 , ASN D:197
binding site for Poly-Saccharide residues NAG D 609 through NAG D 610 bound to ASN D 197
12
AD3
SOFTWARE
ASN D:234 , TRP K:55 , SER K:70 , ALA K:71 , VAL K:72 , ASP K:73
binding site for Poly-Saccharide residues NAG D 611 through MAN D 614 bound to ASN D 234
13
AD4
SOFTWARE
LYS D:65 , ASN D:262 , ASN D:377 , GLY D:379 , CYS D:445 , VAL D:446 , SER D:447
binding site for Poly-Saccharide residues NAG D 615 through MAN D 621 bound to ASN D 262
14
AD5
SOFTWARE
ASN D:276 , THR D:278 , ASN D:279 , GLN K:1 , TYR K:25 , GLY K:26
binding site for Poly-Saccharide residues NAG D 622 through MAN D 625 bound to ASN D 276
15
AD6
SOFTWARE
GLN D:293 , ASN D:295 , ASN D:332 , SER D:334 , SER D:413 , ARG D:444
binding site for Poly-Saccharide residues NAG D 626 through NAG D 627 bound to ASN D 295
16
AD7
SOFTWARE
ASN D:301 , ILE D:323 , GLY D:441
binding site for Poly-Saccharide residues NAG D 628 through NAG D 629 bound to ASN D 301
17
AD8
SOFTWARE
HIS D:330 , ASN D:332 , THR D:415
binding site for Poly-Saccharide residues NAG D 630 through MAN D 633 bound to ASN D 332
18
AD9
SOFTWARE
ASN D:339 , TRP D:395
binding site for Mono-Saccharide NAG D 634 bound to ASN D 339
19
AE1
SOFTWARE
ASN D:355
binding site for Mono-Saccharide NAG D 635 bound to ASN D 355
20
AE2
SOFTWARE
ASN D:363 , SER D:364 , ASN D:386 , SER D:388 , NAG D:638 , NAG D:639
binding site for Poly-Saccharide residues NAG D 636 through NAG D 637 bound to ASN D 363
21
AE3
SOFTWARE
ASN D:386 , SER D:388 , NAG D:636 , NAG D:637
binding site for Poly-Saccharide residues NAG D 638 through BMA D 640 bound to ASN D 386
22
AE4
SOFTWARE
ASN D:392
binding site for Poly-Saccharide residues NAG D 641 through NAG D 642 bound to ASN D 392
23
AE5
SOFTWARE
PRO D:291 , VAL D:292 , GLN D:293 , ASN D:448
binding site for Poly-Saccharide residues NAG D 643 through BMA D 645 bound to ASN D 448
24
AE6
SOFTWARE
GLY C:527 , GLU E:87 , ASN E:88
binding site for Poly-Saccharide residues NAG E 601 through NAG E 602 bound to ASN E 88
25
AE7
SOFTWARE
ASN E:133 , ASP E:141 , GLY E:152
binding site for Poly-Saccharide residues NAG E 603 through NAG E 604 bound to ASN E 133
26
AE8
SOFTWARE
ASN E:156 , TYR E:173
binding site for Poly-Saccharide residues NAG E 605 through BMA E 607 bound to ASN E 156
27
AE9
SOFTWARE
PHE E:159 , ASN E:160 , LYS E:171
binding site for Poly-Saccharide residues NAG E 608 through NAG E 609 bound to ASN E 160
28
AF1
SOFTWARE
ARG E:192 , ILE E:194 , ASN E:197
binding site for Poly-Saccharide residues NAG E 610 through NAG E 611 bound to ASN E 197
29
AF2
SOFTWARE
ASN E:234 , TRP O:55 , SER O:70 , ALA O:71 , VAL O:72 , ASP O:73
binding site for Poly-Saccharide residues NAG E 612 through MAN E 615 bound to ASN E 234
30
AF3
SOFTWARE
ASN E:262 , ASN E:377 , GLY E:379 , GLN E:440 , CYS E:445 , VAL E:446 , SER E:447
binding site for Poly-Saccharide residues NAG E 616 through MAN E 622 bound to ASN E 262
31
AF4
SOFTWARE
ASN E:276 , THR E:278 , ASN E:279 , GLN O:1 , HIS O:3 , TYR O:25 , GLY O:26
binding site for Poly-Saccharide residues NAG E 623 through MAN E 627 bound to ASN E 276
32
AF5
SOFTWARE
ASN E:295 , ASN E:332 , SER E:334 , SER E:413 , ARG E:444
binding site for Poly-Saccharide residues NAG E 628 through NAG E 629 bound to ASN E 295
33
AF6
SOFTWARE
ASN E:301 , ILE E:323
binding site for Poly-Saccharide residues NAG E 630 through NAG E 631 bound to ASN E 301
34
AF7
SOFTWARE
HIS E:330 , ASN E:332 , THR E:415
binding site for Poly-Saccharide residues NAG E 632 through NAG E 633 bound to ASN E 332
35
AF8
SOFTWARE
ASN E:339
binding site for Mono-Saccharide NAG E 634 bound to ASN E 339
36
AF9
SOFTWARE
ASN E:355
binding site for Mono-Saccharide NAG E 635 bound to ASN E 355
37
AG1
SOFTWARE
ASN E:363 , SER E:364 , ASN E:386 , SER E:388 , NAG E:639
binding site for Poly-Saccharide residues NAG E 636 through BMA E 638 bound to ASN E 363
38
AG2
SOFTWARE
ASN E:386 , SER E:388 , NAG E:636 , NAG E:637
binding site for Mono-Saccharide NAG E 639 bound to ASN E 386
39
AG3
SOFTWARE
ASN E:392
binding site for Poly-Saccharide residues FUC E 640 through NAG E 641 bound to ASN E 392
40
AG4
SOFTWARE
PRO E:291 , VAL E:292 , GLN E:293 , ASN E:448
binding site for Poly-Saccharide residues NAG E 642 through MAN E 646 bound to ASN E 448
41
AG5
SOFTWARE
GLY A:527 , GLU F:87 , ASN F:88
binding site for Poly-Saccharide residues NAG F 601 through NAG F 602 bound to ASN F 88
42
AG6
SOFTWARE
ASN F:133 , ASP F:141 , GLY F:152 , ARG F:178 , LYS F:189
binding site for Mono-Saccharide NAG F 603 bound to ASN F 133
43
AG7
SOFTWARE
ASN F:156 , TYR F:173 , LEU F:175 , GLY H:26 , PHE H:27 , TYR H:28 , ASP H:31 , TRP H:54 , TYR H:107
binding site for Poly-Saccharide residues NAG F 604 through MAN F 608 bound to ASN F 156
44
AG8
SOFTWARE
PHE F:159 , ASN F:160 , LYS F:171 , ARG H:52 , GLN H:61 , GLN H:111 , GLY H:113 , PHE H:114 , PHE I:28
binding site for Poly-Saccharide residues NAG F 609 through MAN F 613 bound to ASN F 160
45
AG9
SOFTWARE
ILE F:184 , ARG F:192 , ASN F:197
binding site for Poly-Saccharide residues NAG F 614 through NAG F 615 bound to ASN F 197
46
AH1
SOFTWARE
ASN F:234 , TRP M:55 , ALA M:71 , VAL M:72 , ASP M:73
binding site for Poly-Saccharide residues NAG F 616 through MAN F 619 bound to ASN F 234
47
AH2
SOFTWARE
ASN F:262 , GLY F:379 , ILE F:439 , GLN F:440 , CYS F:445 , VAL F:446 , SER F:447
binding site for Poly-Saccharide residues NAG F 620 through MAN F 626 bound to ASN F 262
48
AH3
SOFTWARE
ASN F:276 , THR F:278 , ASN F:279 , GLN M:1 , HIS M:3 , TYR M:25
binding site for Poly-Saccharide residues NAG F 627 through MAN F 631 bound to ASN F 276
49
AH4
SOFTWARE
GLN F:293 , ASN F:295 , ASN F:332 , SER F:334 , SER F:413 , ARG F:444
binding site for Poly-Saccharide residues NAG F 632 through NAG F 633 bound to ASN F 295
50
AH5
SOFTWARE
ASN F:301 , ILE F:323 , GLY F:441
binding site for Poly-Saccharide residues NAG F 634 through NAG F 635 bound to ASN F 301
51
AH6
SOFTWARE
HIS F:330 , ASN F:332 , THR F:415
binding site for Poly-Saccharide residues NAG F 636 through NAG F 637 bound to ASN F 332
52
AH7
SOFTWARE
ASN F:339 , TRP F:395
binding site for Mono-Saccharide NAG F 638 bound to ASN F 339
53
AH8
SOFTWARE
ASN F:355
binding site for Mono-Saccharide NAG F 639 bound to ASN F 355
54
AH9
SOFTWARE
ASN F:363 , SER F:364 , ASN F:386 , SER F:388 , NAG F:643 , NAG F:644
binding site for Poly-Saccharide residues NAG F 640 through BMA F 642 bound to ASN F 363
55
AI1
SOFTWARE
ASN F:386 , SER F:388 , NAG F:640 , NAG F:641
binding site for Poly-Saccharide residues NAG F 643 through BMA F 645 bound to ASN F 386
56
AI2
SOFTWARE
ASN F:392
binding site for Mono-Saccharide NAG F 646 bound to ASN F 392
57
AI3
SOFTWARE
PRO F:291 , GLN F:293 , ASN F:448
binding site for Poly-Saccharide residues NAG F 647 through BMA F 649 bound to ASN F 448
[
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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CATH Domains
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Pfam Domains
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Atom Selection
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Protein
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Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
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Stereo
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1019 KB)
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