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Class: Small proteins (3458)
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Fold: Rubredoxin-like (572)
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Superfamily: Rubredoxin-like (127)
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Family: automated matches (7)
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Protein domain: automated matches (7)
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Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887] (3)
2JI1A:2-37; B:2-37; C:2-37; D:2-37X-RAY STRUCTURE OF WILD-TYPE SUPEROXIDE REDUCTASE FROM DESULFOARCULUS BAARSII
2JI2A:1-37; B:2-37; C:1-37; D:2-37X-RAY STRUCTURE OF E114A MUTANT OF SUPEROXIDE REDUCTASE FROM DESULFOARCULUS BAARSII IN THE NATIVE, REDUCED FORM
2JI3A:1-37; C:1-37; D:2-37; B:2-37X-RAY STRUCTURE OF THE IRON-PEROXIDE INTERMEDIATE OF SUPEROXIDE REDUCTASE (E114A MUTANT) FROM DESULFOARCULUS BAARSII
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Pyrococcus furiosus [TaxId: 2261] (4)
3MPSA:135-171; B:135-171; D:135-171; F:135-171; G:135-171; H:135-171; I:135-171; K:135-171PEROXIDE BOUND OXIDIZED RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS
3PWFA:135-171; B:135-171HIGH RESOLUTION STRUCTURE OF THE FULLY REDUCED FORM OF RUBRERYTHRIN FROM P. FURIOSUS
3PZAA:135-171; B:135-171FULLY REDUCED (ALL-FERROUS) PYROCOCCUS RUBRERYTHRIN AFTER A 10 SECOND EXPOSURE TO PEROXIDE.
3QVDA:135-171; G:135-171; H:135-171; B:135-171; C:135-171; D:135-171; E:135-171; F:135-171EXPOSURE OF RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS TO PEROXIDE, FIFTEEN SECOND TIME POINT.
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Family: Cytochrome c oxidase Subunit F (25)
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Protein domain: automated matches (1)
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Cow (Bos taurus) [TaxId: 9913] (1)
2Y69F:; S:BOVINE HEART CYTOCHROME C OXIDASE RE-REFINED WITH MOLECULAR OXYGEN
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Protein domain: Cytochrome c oxidase Subunit F (24)
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Cow (Bos taurus) [TaxId: 9913] (24)
1OCCF:; S:STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
1OCOF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE
1OCRF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
1OCZF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN AZIDE-BOUND STATE
1V54F:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
1V55F:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY REDUCED STATE
2DYRF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
2DYSF:; S:BOVINE HEART CYTOCHROME C OXIDASE MODIFIED BY DCCD
2EIJF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
2EIKF:; S:CADMIUM ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
2EILF:; S:CADMIUM ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE
2EIMF:; S:ZINC ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
2EINF:; S:ZINC ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE
2OCCF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
2ZXWF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (1-S X-RAY EXPOSURE DATASET)
3ABKF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE NO-BOUND FULLY REDUCED STATE (50K)
3ABLF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (15-S X-RAY EXPOSURE DATASET)
3ABMF:; S:BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (200-S X-RAY EXPOSURE DATASET)
3AG1F:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE CARBON MONOXIDE-BOUND FULLY REDUCED STATE AT 280 K
3AG2F:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE CARBON MONOXIDE-BOUND FULLY REDUCED STATE AT 100 K
3AG3F:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE NITRIC OXIDE-BOUND FULLY REDUCED STATE AT 100 K
3AG4F:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE CYANIDE ION-BOUND FULLY REDUCED STATE AT 100 K
3ASNF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE MEASURED AT 1.7470 ANGSTROM WAVELENGTH
3ASOF:; S:BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE MEASURED AT 0.9 ANGSTROM WAVELENGTH
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Family: Desulforedoxin (10)
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Protein domain: Desulfoferrodoxin N-terminal domain (4)
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Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887] (3)
1VZGA:2-37; B:2-37STRUCTURE OF SUPEROXIDE REDUCTASE BOUND TO FERROCYANIDE AND ACTIVE SITE EXPANSION UPON X-RAY INDUCED PHOTOREDUCTION
1VZHA:2-37; B:2-37STRUCTURE OF SUPEROXIDE REDUCTASE BOUND TO FERROCYANIDE AND ACTIVE SITE EXPANSION UPON X-RAY INDUCED PHOTOREDUCTION
1VZIA:1-37; B:1-37STRUCTURE OF SUPEROXIDE REDUCTASE BOUND TO FERROCYANIDE AND ACTIVE SITE EXPANSION UPON X-RAY INDUCED PHOTOREDUCTION
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Desulfovibrio desulfuricans [TaxId: 876] (1)
1DFXA:1-36DESULFOFERRODOXIN FROM DESULFOVIBRIO DESULFURICANS, ATCC 27774
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Protein domain: Desulforedoxin (6)
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Desulfovibrio gigas [TaxId: 879] (6)
1CFWA:; B:GA-SUBSTITUTED DESULFOREDOXIN
1DCDA:; B:DESULFOREDOXIN COMPLEXED WITH CD2+
1DHGA:; B:HG-SUBSTITUTED DESULFOREDOXIN
1DXGA:; B:CRYSTAL STRUCTURE OF DESULFOREDOXIN FROM DESULFOVIBRIO GIGAS AT 1.8 A RESOLUTION
2LK5A:; B:SOLUTION STRUCTURE OF THE ZN(II) FORM OF DESULFOREDOXIN
2LK6A:; B:NMR DETERMINATION OF THE GLOBAL STRUCTURE OF THE CD-113 DERIVATIVE OF DESULFOREDOXIN
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Family: Rubredoxin (85)
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Protein domain: automated matches (4)
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Clostridium pasteurianum [TaxId: 1501] (1)
2PVEA:; B:; C:NMR AND X-RAY ANALYSIS OF STRUCTURAL ADDITIVITY IN METAL BINDING SITE-SWAPPED HYBRIDS OF RUBREDOXIN
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Desulfovibrio gigas [TaxId: 879] (1)
1SPWA:SOLUTION STRUCTURE OF A LOOP TRUNCATED MUTANT FROM D. GIGAS RUBREDOXIN, NMR
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Mycobacterium ulcerans [TaxId: 362242] (1)
2M4YA:RUBREDOXIN TYPE PROTEIN FROM MYCOBACTERIUM ULCERANS
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Pseudomonas aeruginosa [TaxId: 208964] (1)
2V3BB:CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA.
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Protein domain: Nigerythrin, C-terminal domain (3)
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Desulfovibrio vulgaris [TaxId: 881] (3)
1YUXA:167-202; B:167-202MIXED VALANT STATE OF NIGERYTHRIN
1YUZA:167-202; B:167-202PARTIALLY REDUCED STATE OF NIGERYTHRIN
1YV1A:167-202; B:167-202FULLY REDUCED STATE OF NIGERYTHRIN (ALL FERROUS)
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Protein domain: Rubredoxin (65)
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Clostridium pasteurianum [TaxId: 1501] (23)
1B13A:CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G10A MUTANT
1B2JA:CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G43A MUTANT
1B2OA:; B:CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G10VG43A MUTANT
1BE7A:CLOSTRIDIUM PASTEURIANUM RUBREDOXIN C42S MUTANT
1BFYA:SOLUTION STRUCTURE OF REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, NMR, 20 STRUCTURES
1C09A:; B:; C:RUBREDOXIN V44A CP
1FHHA:X-RAY CRYSTAL STRUCTURE OF OXIDIZED RUBREDOXIN
1FHMA:X-RAY CRYSTAL STRUCTURE OF REDUCED RUBREDOXIN
1IRNA:RUBREDOXIN (ZN-SUBSTITUTED) AT 1.2 ANGSTROMS RESOLUTION
1IROA:RUBREDOXIN (OXIDIZED, FE(III)) AT 1.1 ANGSTROMS RESOLUTION
1R0FA:GALLIUM-SUBSTITUTED RUBREDOXIN
1R0GA:MERCURY-SUBSTITUTED RUBREDOXIN
1R0HA:COBALT-SUBSTITUTED RUBREDOXIN
1R0IA:CADMIUM-SUBSTITUTED RUBREDOXIN
1R0JA:NICKEL-SUBSTITUTED RUBREDOXIN
1SMMA:CRYSTAL STRUCTURE OF CP RD L41A MUTANT IN OXIDIZED STATE
1SMUA:CRYSTAL STRUCTURE OF CP RD L41A MUTANT IN REDUCED STATE 1 (DROP-REDUCED)
1SMWA:CRYSTAL STRUCTURE OF CP RD L41A MUTANT IN REDUCED STATE 2 (SOAKED)
1T9OA:; B:; C:CRYSTAL STRUCTURE OF V44G CP RUBREDOXIN
1T9PA:; B:; C:CRYSTAL STRUCTURE OF V44A, G45P CP RUBREDOXIN
1T9QA:CRYSTAL STRUCTURE OF V44L CP RUBREDOXIN
4RXNA:CRYSTALLOGRAPHIC REFINEMENT OF RUBREDOXIN AT 1.2 ANGSTROMS RESOLUTION
5RXNA:COMBINED CRYSTALLOGRAPHIC REFINEMENT AND ENERGY MINIMIZATION OF RUBREDOXIN AT 1.2 ANGSTROM RESOLUTION
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Desulfovibrio desulfuricans, strain 27774 [TaxId: 876] (1)
6RXNA:THE STRUCTURE OF RUBREDOXIN FROM DESULFOVIBRIO DESULFURICANS
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Desulfovibrio gigas [TaxId: 879] (3)
1E8JA:SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS ZINC RUBREDOXIN, NMR, 20 STRUCTURES
1RDGA:RUBREDOXIN FROM DESULFOVIBRIO GIGAS. A MOLECULAR MODEL OF THE OXIDIZED FORM AT 1.4 ANGSTROMS RESOLUTION
2DSXA:CRYSTAL STRUCTURE OF RUBREDOXIN FROM DESULFOVIBRIO GIGAS TO ULTRA-HIGH 0.68 A RESOLUTION
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Desulfovibrio vulgaris [TaxId: 881] (7)
1RB9A:RUBREDOXIN FROM DESULFOVIBRIO VULGARIS REFINED ANISOTROPICALLY AT 0.92 ANGSTROMS RESOLUTION
1RDVA:RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
2KKDA:NMR STRUCTURE OF NI SUBSTITUED DESULFOVIBRIO VULGARIS RUBREDOXIN
2QL0A:ZINC-SUBSTITUTED RUBREDOXIN FROM DESULFOVIBRIO VULGARIS
2RDVA:; B:; C:RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
7RXNA:STRUCTURE OF RUBREDOXIN FROM DESULFOVIBRIO VULGARIS AT 1.5 A RESOLUTION
8RXNA:REFINEMENT OF RUBREDOXIN FROM DESULFOVIBRIO VULGARIS AT 1.0 ANGSTROMS WITH AND WITHOUT RESTRAINTS
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Guillardia theta [TaxId: 55529] (2)
1DX8A:RUBREDOXIN FROM GUILLARDIA THETA
1H7VA:RUBREDOXIN FROM GUILLARDIA THETA
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Pyrococcus abyssi [TaxId: 29292] (3)
1YK4A:ULTRA-HIGH RESOLUTION STRUCTURE OF PYROCOCCUS ABYSSI RUBREDOXIN W4L/R5S
1YK5A:; B:; C:; D:PYROCOCCUS ABYSSI RUBREDOXIN
2PYAA:ULTRA-HIGH RESOLUTION STRUCTURE OF P. ABYSSI RUBREDOXIN W4L/R5S/A44S
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Pyrococcus furiosus [TaxId: 186497] (1)
3SS2A:NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING 48 HOURS 3RD PASS DATA
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Pyrococcus furiosus [TaxId: 2261] (25)
1BQ8A:RUBREDOXIN (METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
1BQ9A:RUBREDOXIN (FORMYL METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
1BRFA:RUBREDOXIN (WILD TYPE) FROM PYROCOCCUS FURIOSUS
1CAAA:X-RAY CRYSTAL STRUCTURES OF THE OXIDIZED AND REDUCED FORMS OF THE RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
1CADA:X-RAY CRYSTAL STRUCTURES OF THE OXIDIZED AND REDUCED FORMS OF THE RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
1IU5A:X-RAY CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROM PYROCOCCUS FURIOSUS
1IU6A:NEUTRON CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROM PYROCOCCUS FURIOSUS
1QCVA:RUBREDOXIN VARIANT (PFRD-XC4) FOLDS WITHOUT IRON
1RWDA:BACKBONE NMR STRUCTURE OF A MUTANT P. FURIOSUS RUBREDOXIN USING RESIDUAL DIPOLAR COUPLINGS
1VCXA:NEUTRON CRYSTAL STRUCTURE OF THE WILD TYPE RUBREDOXIN FROM PYROCOCCUS FURIOSUS AT 1.5A RESOLUTION
1ZRPA:SOLUTION-STATE STRUCTURE BY NMR OF ZINC-SUBSTITUTED RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
2PVXA:; H:; B:; C:; D:; E:; F:; G:NMR AND X-RAY ANALYSIS OF STRUCTURAL ADDITIVITY IN METAL BINDING SITE-SWAPPED HYBRIDS OF RUBREDOXIN
3KYUA:X-RAY CRYSTAL STRUCTURE DETERMINATION OF FULLY PERDEUTERATED RUBREDOXIN AT 100K
3KYVA:DENOVO X-RAY CRYSTAL STRUCTURE DETERMINATION OF H-LABELED PERDEUTERATED RUBREDOXIN AT 100K
3KYWA:XRAY CRYSTAL STRUCTURE DETERMINATION OF H-LABELED PERDEUTERATED RUBREDOXIN AT 295K
3KYXA:JOINT XRAY/NEUTRON CRYSTAL STRUCTURE DETERMINATION OF FULLY PERDEUTERATED RUBREDOXIN AT 295K
3KYYA:JOINT XRAY/NEUTRON CRYSTAL STRUCTURE DETERMINATION OF H-LABELED PERDEUTERATED RUBREDOXIN AT 295K
3RYGA:128 HOURS NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN
3RZ6A:NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING 40 HOURS 1ST PASS DATA
3RZTA:NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING RAPID (14 HOURS) DATA
4AR3A:NEAR-ATOMIC RESOLUTION NEUTRON CRYSTALLOGRAPHY ON THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN.
4AR4A:NEUTRON CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN TO 1.38 ANGSTROM RESOLUTION.
4AR5A:X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN IN D2O AT 295K (IN QUARTZ CAPILLARY) TO 1.00 ANGSTROM RESOLUTION.
4AR6A:X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN AT 295 K (IN QUARTZ CAPILLARY) TO 0.92 ANGSTROMS RESOLUTION.
4K9FA:NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN REFINED AGAINST 1.75 RESOLUTION DATA COLLECTED ON THE NEW IMAGINE INSTRUMENT AT HFIR, ORNL
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Protein domain: Rubrerythrin, C-terminal domain (12)
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Desulfovibrio vulgaris [TaxId: 881] (10)
1B71A:148-191RUBRERYTHRIN
1DVBA:148-191RUBRERYTHRIN
1JYBA:148-191CRYSTAL STRUCTURE OF RUBRERYTHRIN
1LKMA:148-191CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN ALL-IRON(III) FORM
1LKOA:148-191CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN ALL-IRON(II) FORM
1LKPA:148-191CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN ALL-IRON(II) FORM, AZIDE ADDUCT
1QYBA:148-191X-RAY CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN WITH ZINC SUBSTITUTED INTO THE [FE(SCYS)4] SITE AND ALTERNATIVE DIIRON SITE STRUCTURES
1RYTA:148-191RUBRERYTHRIN
1S2ZA:148-191X-RAY CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN WITH DISPLACEMENT OF IRON BY ZINC AT THE DIIRON SITE
1S30A:148-191X-RAY CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS RUBRERYTHRIN WITH DISPLACEMENT OF IRON BY ZINC AT THE DIIRON SITE
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Pyrococcus furiosus [TaxId: 2261] (2)
1NNQA:135-171; B:135-171RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS PFU-1210814
2HR5A:135-171; B:135-171PF1283- RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS IRON BOUND FORM
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Protein domain: Two-iron rubredoxin (1)
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Pseudomonas oleovorans [TaxId: 301] (1)
1S24A:RUBREDOXIN DOMAIN II FROM PSEUDOMONAS OLEOVORANS