No.	Name	Count	Type	Full Name
1	CMO	2	Ligand/Ion	CARBON MONOXIDE
2	CU	6	Ligand/Ion	COPPER (II) ION
3	HEA	4	Ligand/Ion	HEME-A
4	MG	2	Ligand/Ion	MAGNESIUM ION
5	NA	2	Ligand/Ion	SODIUM ION
6	ZN	2	Ligand/Ion	ZINC ION

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:240 , HIS A:290 , HIS A:291 , CMO A:520	BINDING SITE FOR RESIDUE CU A 517
02	AC2	SOFTWARE	HIS A:368 , ASP A:369 , GLU B:198	BINDING SITE FOR RESIDUE MG A 518
03	AC3	SOFTWARE	GLU A:40 , GLN A:43 , GLY A:45 , SER A:441	BINDING SITE FOR RESIDUE NA A 519
04	AC4	SOFTWARE	HIS B:161 , CYS B:196 , CYS B:200 , MET B:207 , CU B:229	BINDING SITE FOR RESIDUE CU B 228
05	AC5	SOFTWARE	CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , CU B:228	BINDING SITE FOR RESIDUE CU B 229
06	AC6	SOFTWARE	CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85	BINDING SITE FOR RESIDUE ZN F 99
07	AC7	SOFTWARE	HIS N:240 , HIS N:290 , HIS N:291 , CMO N:520	BINDING SITE FOR RESIDUE CU N 517
08	AC8	SOFTWARE	HIS N:368 , ASP N:369 , GLU O:198	BINDING SITE FOR RESIDUE MG N 518
09	AC9	SOFTWARE	GLU N:40 , GLN N:43 , GLY N:45 , SER N:441	BINDING SITE FOR RESIDUE NA N 519
10	BC1	SOFTWARE	HIS O:161 , CYS O:196 , CYS O:200 , MET O:207 , CU O:229	BINDING SITE FOR RESIDUE CU O 228
11	BC2	SOFTWARE	CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , CU O:228	BINDING SITE FOR RESIDUE CU O 229
12	BC3	SOFTWARE	CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85	BINDING SITE FOR RESIDUE ZN S 99
13	BC4	SOFTWARE	GLY A:27 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , HIS A:61 , ALA A:62 , MET A:65 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , LEU A:381 , SER A:382 , VAL A:386 , MET A:390 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , TYR A:440 , MET A:468	BINDING SITE FOR RESIDUE HEA A 515
14	BC5	SOFTWARE	TRP A:126 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , CMO A:520 , ILE B:72	BINDING SITE FOR RESIDUE HEA A 516
15	BC6	SOFTWARE	HIS A:240 , HIS A:290 , HIS A:291 , HEA A:516 , CU A:517	BINDING SITE FOR RESIDUE CMO A 520
16	BC7	SOFTWARE	GLY N:27 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , LEU N:381 , SER N:382 , MET N:390 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , TYR N:440 , MET N:468	BINDING SITE FOR RESIDUE HEA N 515
17	BC8	SOFTWARE	TRP N:126 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ILE N:312 , THR N:316 , GLY N:317 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , CMO N:520 , ILE O:72	BINDING SITE FOR RESIDUE HEA N 516
18	BC9	SOFTWARE	HIS N:240 , VAL N:243 , HIS N:291 , HEA N:516 , CU N:517	BINDING SITE FOR RESIDUE CMO N 520
19	CXB	UNKNOWN	HEA A:516 , CU A:517 , CMO A:520 , HEA N:516 , CU N:517 , CMO N:520	CARBON MONOXIDE BINDING SITE.

No.	Residues
1	H:29	-	H:64
2	H:39	-	H:53
3	U:29	-	U:64
4	U:39	-	U:53

No.	Residues
1	Pro A:130	-	Pro A:131
2	Cys A:498	-	Pro A:499
3	Trp C:116	-	Pro C:117
4	Pro N:130	-	Pro N:131
5	Cys N:498	-	Pro N:499
6	Trp P:116	-	Pro P:117

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COX2_TM	PS50999	Cytochrome oxidase subunit II transmembrane region profile.	COX2_BOVIN	1-91	2	B:1-91 O:1-91
2	COX1	PS50855	Cytochrome oxidase subunit I profile.	COX1_BOVIN	1-514	2	A:1-514 N:1-514
3	COX3	PS50253	Heme-copper oxidase subunit III family profile.	COX3_BOVIN	4-261	2	C:4-261 P:4-261
4	CHCH	PS51808	Coiled coil-helix-coiled coil-helix (CHCH) domain profile.	CX6B1_BOVIN	27-73	2	H:26-72 U:26-72
5	COX5B_2	PS51359	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	COX5B_BOVIN	32-129	2	F:1-98 S:1-98
6	COX6A	PS01329	Cytochrome c oxidase subunit VIa signature.	CX6A2_BOVIN	67-84	2	G:55-72 T:55-72
7	COX2_CUA	PS50857	Cytochrome oxidase subunit II copper A binding domain profile.	COX2_BOVIN	92-225	2	B:92-225 O:92-225
8	COX5B_1	PS00848	Cytochrome c oxidase subunit Vb, zinc binding region signature.	COX5B_BOVIN	100-122	2	F:69-91 S:69-91
9	COX2	PS00078	CO II and nitrous oxide reductase dinuclear copper centers signature.	COX2_BOVIN	159-207	2	B:159-207 O:159-207
10	COX1_CUB	PS00077	Heme-copper oxidase catalytic subunit, copper B binding region signature.	COX1_BOVIN	236-291	2	A:236-291 N:236-291

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000018778	1	ENSBTAE00000392730	chr14:62538824-62538908	85	COX6C_BOVIN	-	0	0	-	-
1.2	ENSBTAT00000018778	2	ENSBTAE00000152930	chr14:62539837-62539968	132	COX6C_BOVIN	1-37	37	2	I:1-36 V:1-36	36 36
1.3	ENSBTAT00000018778	3	ENSBTAE00000152932	chr14:62540912-62541039	128	COX6C_BOVIN	38-74	37	2	I:37-73 V:37-73	37 37
1.4	ENSBTAT00000018778	4	ENSBTAE00000382779	chr14:62548625-62548744	120	COX6C_BOVIN	-	0	0	-	-
2.1	ENSBTAT00000019808	1	ENSBTAE00000161251	chr18:46232862-46232802	61	CX7A1_BOVIN	1-5	5	0	-	-
2.2	ENSBTAT00000019808	2	ENSBTAE00000161252	chr18:46232104-46232018	87	CX7A1_BOVIN	6-34	29	2	J:1-13 W:1-13	13 13
2.3	ENSBTAT00000019808	3	ENSBTAE00000161253	chr18:46231883-46231799	85	CX7A1_BOVIN	35-63	29	2	J:14-42 W:14-42	29 29
2.4	ENSBTAT00000019808	4	ENSBTAE00000161254	chr18:46231418-46231281	138	CX7A1_BOVIN	63-80	18	2	J:42-56 W:42-56	15 15
3.1	ENSBTAT00000022949	1	ENSBTAE00000344359	chr21:33835267-33835426	160	COX5A_BOVIN	1-36	36	0	-	-
3.2	ENSBTAT00000022949	2	ENSBTAE00000187373	chr21:33840320-33840436	117	COX5A_BOVIN	36-75	40	2	E:1-32 R:1-32	32 32
3.3	ENSBTAT00000022949	3	ENSBTAE00000187374	chr21:33842603-33842724	122	COX5A_BOVIN	75-115	41	2	E:32-72 R:32-72	41 41
3.4	ENSBTAT00000022949	4	ENSBTAE00000187376	chr21:33843979-33844143	165	COX5A_BOVIN	116-152	37	2	E:73-109 R:73-109	37 37
3.5	ENSBTAT00000022949	5	ENSBTAE00000187379	chr21:33846054-33846214	161	COX5A_BOVIN	-	0	0	-	-
4.1	ENSBTAT00000026002	1	ENSBTAE00000425992	chr25:29305227-29305113	115	CX6A2_BOVIN	1-25	25	2	G:1-13 T:1-13	13 13
4.2	ENSBTAT00000026002	2	ENSBTAE00000211646	chr25:29304966-29304830	137	CX6A2_BOVIN	25-70	46	2	G:13-58 T:13-58	46 46
4.3	ENSBTAT00000026002	3	ENSBTAE00000211652	chr25:29304732-29304604	129	CX6A2_BOVIN	71-97	27	2	G:59-84 T:59-84	26 26

Reformat:	Number of residues per line =  ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete  aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d1ocoa_ A: Mitochondrial cytochrome c oxidase, subunit I                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ocoA00 A:1-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh.hhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: A:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: A:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco A   1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d1ocob2 B:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d1ocob1 B:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains 1ocoB01 B:1-91  [code=1.10.287.90, no name defined]                                        1ocoB02 B:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee....hhh..............eeee....eeeeeee....eeeeehhh.eeeee.....eeeee.....eeeee..............eeeeee.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: B:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: B:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: B:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco B   1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       

Chain C from PDB  Type:PROTEIN  Length:261
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
           COX3_BOVIN     1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d1ococ_ C: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                            SCOP domains
               CATH domains 1ocoC01 C:1-70  [code=1.10.287.70, no name defined]                   1ocoC02 C:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh................hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---COX3  PDB: C:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco C   1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d1ocod_ D: Mitochondrial cytochrome c oxidase subunit IV                                                                                         SCOP domains
               CATH domains 1ocoD00 D:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh......................hhhhhhhhhhh..hhh..hhhhhhhhhhh....hhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.hhhhhhhhhhhhh.........hhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oco D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain E from PDB  Type:PROTEIN  Length:109
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:109
                                    53        63        73        83        93       103       113       123       133       143         
          COX5A_BOVIN    44 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d1ocoe_ E: Cytochrome c oxidase subunit E                                                                     SCOP domains
               CATH domains 1ocoE00 E:1-109  [code=1.25.40.40, no name defined]                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:1-32           ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) -------------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 1oco E   1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    10        20        30        40        50        60        70        80        90       100         

Chain F from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d1ocof_ F: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 1ocoF00 F:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh..hhhhhhhhhhh.....................eeeee...eeeeee.........eeeeee....eee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: F:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: F:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1oco F   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        

Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d1ocog_ G: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 1ocoG00 G:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhh.hhhhhhhhhhhhhh............................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: G:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 1oco G   1 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10        20        30        40        50        60        70        80    

Chain H from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d1ocoh_ H: Cytochrome c oxidase subunit h                                   SCOP domains
               CATH domains 1ocoH00 H:11-85 Cytochrome C oxidase subunit h                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: H:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1oco H  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     

Chain I from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d1ocoi_ I: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains 1ocoI00 I:1-73 Cytochrome C Oxidase, chain I                              CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:1-36 UniProt: 1-37 Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 1oco I   1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    10        20        30        40        50        60        70   

Chain J from PDB  Type:PROTEIN  Length:56
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:56
                                    31        41        51        61        71      
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  77
               SCOP domains d1ocoj_ J:                                               SCOP domains
               CATH domains 1ocoJ00 J:1-56 Cytochrome C Oxidase, chain J             CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       -------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4        Transcript 2 (2)
                 1oco J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  56
                                    10        20        30        40        50      

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d1ocok_ K:                                        SCOP domains
               CATH domains 1ocoK00 K:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1oco K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain L from PDB  Type:PROTEIN  Length:47
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:47
                                    26        36        46        56       
          COX7C_BOVIN    17 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d1ocol_ L:                                      SCOP domains
               CATH domains 1ocoL00 L:1-47 Cytochrome C Oxidase, chain L    CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1oco L   1 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    10        20        30        40       

Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d1ocom_ M:                                  SCOP domains
               CATH domains 1ocoM00 M:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 1oco M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d1ocon_ N: Mitochondrial cytochrome c oxidase, subunit I                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ocoN00 N:1-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATH domains
           Pfam domains (1) -----------COX1-1ocoN01 N:12-461                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------COX1-1ocoN02 N:12-461                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh.hhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: N:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: N:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco N   1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    

Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d1ocoo2 O:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d1ocoo1 O:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains 1ocoO01 O:1-91  [code=1.10.287.90, no name defined]                                        1ocoO02 O:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
           Pfam domains (1) COX2_TM-1ocoO03 O:1-83                                                             -----------COX2-1ocoO01 O:95-214                                                                                                   ------------- Pfam domains (1)
           Pfam domains (2) COX2_TM-1ocoO04 O:1-83                                                             -----------COX2-1ocoO02 O:95-214                                                                                                   ------------- Pfam domains (2)
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee....hhh..............eeee....eeeeeee....eeeeehhh.eeeee.....eeeee.....eeeee..............eeeeee.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: O:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: O:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: O:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco O   1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       

Chain P from PDB  Type:PROTEIN  Length:261
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
           COX3_BOVIN     1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d1ocop_ P: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                            SCOP domains
               CATH domains 1ocoP01 P:1-70  [code=1.10.287.70, no name defined]                   1ocoP02 P:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
           Pfam domains (1) -----COX3-1ocoP01 P:6-261                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) -----COX3-1ocoP02 P:6-261                                                                                                                                                                                                                                             Pfam domains (2)
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh................hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---COX3  PDB: P:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oco P   1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 

Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d1ocoq_ Q: Mitochondrial cytochrome c oxidase subunit IV                                                                                         SCOP domains
               CATH domains 1ocoQ00 Q:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
           Pfam domains (1) COX4-1ocoQ01 Q:4-146                                                                                                                           - Pfam domains (1)
           Pfam domains (2) COX4-1ocoQ02 Q:4-146                                                                                                                           - Pfam domains (2)
         Sec.struct. author ....hhhhh......................hhhhhhhhhhh..hhh..hhhhhhhhhhh....hhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.hhhhhhhhhhhhh.........hhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oco Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain R from PDB  Type:PROTEIN  Length:109
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:109
                                    53        63        73        83        93       103       113       123       133       143         
          COX5A_BOVIN    44 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d1ocor_ R: Cytochrome c oxidase subunit E                                                                     SCOP domains
               CATH domains 1ocoR00 R:1-109  [code=1.25.40.40, no name defined]                                                           CATH domains
           Pfam domains (1) COX5A-1ocoR01 R:1-108                                                                                       - Pfam domains (1)
           Pfam domains (2) COX5A-1ocoR02 R:1-108                                                                                       - Pfam domains (2)
         Sec.struct. author .......hhhhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:1-32           ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) -------------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 1oco R   1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    10        20        30        40        50        60        70        80        90       100         

Chain S from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d1ocos_ S: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 1ocoS00 S:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
           Pfam domains (1) COX5B-1ocoS01 S:1-98                                                                               Pfam domains (1)
           Pfam domains (2) COX5B-1ocoS02 S:1-98                                                                               Pfam domains (2)
         Sec.struct. author ........hhhh..hhhhhhhhhhh.....................eeeee...eeeeee.........eeeeee....eee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: S:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: S:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1oco S   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        

Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d1ocot_ T: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 1ocoT00 T:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
           Pfam domains (1) COX6A-1ocoT01 T:1-79                                                           ----- Pfam domains (1)
           Pfam domains (2) COX6A-1ocoT02 T:1-79                                                           ----- Pfam domains (2)
         Sec.struct. author ............hhhhhhhhhh.hhhhhhhhhhhhhh............................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: T:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 1oco T   1 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10        20        30        40        50        60        70        80    

Chain U from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d1ocou_ U: Cytochrome c oxidase subunit h                                   SCOP domains
               CATH domains 1ocoU00 U:11-85 Cytochrome C oxidase subunit h                              CATH domains
           Pfam domains (1) -------COX6B-1ocoU01 U:18-82                                            --- Pfam domains (1)
           Pfam domains (2) -------COX6B-1ocoU02 U:18-82                                            --- Pfam domains (2)
         Sec.struct. author .......hhh.....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: U:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1oco U  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     

Chain V from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d1ocov_ V: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains 1ocoV00 V:1-73 Cytochrome C Oxidase, chain I                              CATH domains
           Pfam domains (1) COX6C-1ocoV01 V:1-72                                                    - Pfam domains (1)
           Pfam domains (2) COX6C-1ocoV02 V:1-72                                                    - Pfam domains (2)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:1-36 UniProt: 1-37 Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 1oco V   1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    10        20        30        40        50        60        70   

Chain W from PDB  Type:PROTEIN  Length:56
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:56
                                    31        41        51        61        71      
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  77
               SCOP domains d1ocow_ W:                                               SCOP domains
               CATH domains 1ocoW00 W:1-56 Cytochrome C Oxidase, chain J             CATH domains
           Pfam domains (1) -COX7a-1ocoW01 W:2-56                                    Pfam domains (1)
           Pfam domains (2) -COX7a-1ocoW02 W:2-56                                    Pfam domains (2)
         Sec.struct. author ....hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       -------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4        Transcript 2 (2)
                 1oco W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  56
                                    10        20        30        40        50      

Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d1ocox_ X:                                        SCOP domains
               CATH domains 1ocoX00 X:6-54 Cytochrome C Oxidase, chain K      CATH domains
           Pfam domains (1) COX7B-1ocoX01 X:6-54                              Pfam domains (1)
           Pfam domains (2) COX7B-1ocoX02 X:6-54                              Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1oco X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain Y from PDB  Type:PROTEIN  Length:47
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:47
                                    26        36        46        56       
          COX7C_BOVIN    17 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d1ocoy_ Y:                                      SCOP domains
               CATH domains 1ocoY00 Y:1-47 Cytochrome C Oxidase, chain L    CATH domains
           Pfam domains (1) COX7C-1ocoY01 Y:1-47                            Pfam domains (1)
           Pfam domains (2) COX7C-1ocoY02 Y:1-47                            Pfam domains (2)
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1oco Y   1 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    10        20        30        40       

Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d1ocoz_ Z:                                  SCOP domains
               CATH domains 1ocoZ00 Z:1-43                              CATH domains
           Pfam domains (1) COX8-1ocoZ01 Z:1-43                         Pfam domains (1)
           Pfam domains (2) COX8-1ocoZ02 Z:1-43                         Pfam domains (2)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 1oco Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'