1T9O - JenaLib

Title :   CRYSTAL STRUCTURE OF V44G CP RUBREDOXIN

Authors :   I. Y. Park, M. K. Eidsness, I. J. Lin, E. B. Gebel, B. Youn, J. L. Harley, T. E. Machonkin, R. O. Frederick, J. L. Markley, E. T. Smith, T. Ichiye, C. Kang

Date :   18 May 04 (Deposition) - 05 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Rubredoxin, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Y. Park, M. K. Eidsness, I. J. Lin, E. B. Gebel, B. Youn, J. L. Harley, T. E. Machonkin, R. O. Frederick, J. L. Markley, E. T. Smith, T. Ichiye, C. Kang
Crystallographic Studies Of V44 Mutants Of Clostridium Pasteurianum Rubredoxin: Effects Of Side-Chain Size On Reduction Potential.
Proteins V. 57 618 2004
PubMed-ID: 15382226 | Reference-DOI: 10.1002/PROT.20243
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 6)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RUBREDOXIN_LIKE	PS50903	Rubredoxin-like domain profile.	RUBR_CLOPA	1-52	3	A:201-252 B:101-152 C:1-52
2	RUBREDOXIN	PS00202	Rubredoxin signature.	RUBR_CLOPA	33-43	3	A:233-243 B:133-143 C:33-43

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RUBREDOXIN_LIKE	PS50903	Rubredoxin-like domain profile.	RUBR_CLOPA	1-52	1	A:201-252 - -
2	RUBREDOXIN	PS00202	Rubredoxin signature.	RUBR_CLOPA	33-43	1	A:233-243 - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RUBREDOXIN_LIKE	PS50903	Rubredoxin-like domain profile.	RUBR_CLOPA	1-52	1	- B:101-152 -
2	RUBREDOXIN	PS00202	Rubredoxin signature.	RUBR_CLOPA	33-43	1	- B:133-143 -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RUBREDOXIN_LIKE	PS50903	Rubredoxin-like domain profile.	RUBR_CLOPA	1-52	1	- - C:1-52
2	RUBREDOXIN	PS00202	Rubredoxin signature.	RUBR_CLOPA	33-43	1	- - C:33-43

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:53
 aligned with RUBR_CLOPA | P00268 from UniProtKB/Swiss-Prot  Length:54

    Alignment length:53
                                    10        20        30        40        50   
           RUBR_CLOPA     1 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE  53
               SCOP domains d1t9oa_ A: Rubredoxin                                 SCOP domains
               CATH domains 1t9oA00 A:201-253  [code=2.20.28.10, no name defined] CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.....hhhhh.....hhhhh...........hhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RUBREDOXIN_LIKE  PDB: A:201-252 UniProt: 1-52       - PROSITE (1)
                PROSITE (2) --------------------------------RUBREDOXIN ---------- PROSITE (2)
                 Transcript ----------------------------------------------------- Transcript
                 1t9o A 201 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGGGKDQFEEVE 253
                                   210       220       230       240       250

Chain B from PDB  Type:PROTEIN  Length:53
 aligned with RUBR_CLOPA | P00268 from UniProtKB/Swiss-Prot  Length:54

    Alignment length:53
                                    10        20        30        40        50   
           RUBR_CLOPA     1 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE  53
               SCOP domains d1t9ob_ B: Rubredoxin                                 SCOP domains
               CATH domains 1t9oB00 B:101-153  [code=2.20.28.10, no name defined] CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.....hhhhh.....hhhhh...........hhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RUBREDOXIN_LIKE  PDB: B:101-152 UniProt: 1-52       - PROSITE (1)
                PROSITE (2) --------------------------------RUBREDOXIN ---------- PROSITE (2)
                 Transcript ----------------------------------------------------- Transcript
                 1t9o B 101 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGGGKDQFEEVE 153
                                   110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:53
 aligned with RUBR_CLOPA | P00268 from UniProtKB/Swiss-Prot  Length:54

    Alignment length:53
                                    10        20        30        40        50   
           RUBR_CLOPA     1 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE  53
               SCOP domains d1t9oc_ C: Rubredoxin                                 SCOP domains
               CATH domains 1t9oC00 C:1-53  [code=2.20.28.10, no name defined]    CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.....hhhhh.....hhhhh...........hhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                PROSITE (1) RUBREDOXIN_LIKE  PDB: C:1-52 UniProt: 1-52          - PROSITE (1)
                PROSITE (2) --------------------------------RUBREDOXIN ---------- PROSITE (2)
                 Transcript ----------------------------------------------------- Transcript
                 1t9o C   1 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGGGKDQFEEVE  53
                                    10        20        30        40        50

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (1, 3)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (RUBR_CLOPA | P00268)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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