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(-) Description

Title :  NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN REFINED AGAINST 1.75 RESOLUTION DATA COLLECTED ON THE NEW IMAGINE INSTRUMENT AT HFIR, ORNL
 
Authors :  P. Munshi, F. Meilleur, D. Myles
Date :  19 Apr 13  (Deposition) - 04 Dec 13  (Release) - 04 Dec 13  (Revision)
Method :  NEUTRON DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Keywords :  Iron, Metal-Binding, Transport, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Meilleur, P. Munshi, L. Robertson, A. D. Stoica, L. Crow, A. Kovalevsky, T. Koritsanszky, B. C. Chakoumakos, R. Blessing, D. A. Myles
The Imagine Instrument: First Neutron Protein Structure And New Capabilities For Neutron Macromolecular Crystallography
Acta Crystallogr. , Sect. D V. 69 2157 2013
PubMed-ID: 24100333  |  Reference-DOI: 10.1107/S0907444913019604

(-) Compounds

Molecule 1 - RUBREDOXIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF1282, RUB
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1
    Synonym: RD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 59)

Asymmetric Unit (2, 59)
No.NameCountTypeFull Name
1DOD58Ligand/Ion
2FE1Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1DOD-1Ligand/Ion
2FE-1Ligand/IonFE (III) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:5 , CYS A:8 , CYS A:38 , CYS A:41BINDING SITE FOR RESIDUE FE A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K9F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4K9F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K9F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K9F)

(-) Exons   (0, 0)

(no "Exon" information available for 4K9F)

(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains d4k9fa_ A: Rubredoxin                                 SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eee....hhhhh.....hhhhh...........hhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  4k9f A  0 MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 52
                                     9        19        29        39        49
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K9F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K9F)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  RUBR_PYRFU | P24297
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  RUBR_PYRFU | P24297
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUBR_PYRFU | P24297: 1bq8 1bq9 1brf 1caa 1cad 1iu5 1iu6 1qcv 1rwd 1vcx 1zrp 2pvx 3kyu 3kyv 3kyw 3kyx 3kyy 3ryg 3rz6 3rzt 3ss2 4ar3 4ar4 4ar5 4ar6 5ai2 5ai3 5nw3

(-) Related Entries Specified in the PDB File

1vcx NEUTRON CRYSTAL STRUCTURE OF THE WILD TYPE RUBREDOXIN FROM PYROCOCCUS FURIOSUS AT 1.5A RESOLUTION
3kyx JOINT XRAY/NEUTRON CRYSTAL STRUCTURE DETERMINATION OF FULLY PERDEUTERATED RUBREDOXIN AT 295K
3ryg NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING 128 HOURS DATA
3rzt NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING RAPID (14 HOURS) DATA
3ss2 NEUTRON STRUCTURE OF PERDEUTERATED RUBREDOXIN USING 48 HOURS DATA
4ar3 NEAR-ATOMIC RESOLUTION NEUTRON CRYSTALLOGRAPHY ON THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN.