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(-) Description

Title :  REFINEMENT OF RUBREDOXIN FROM DESULFOVIBRIO VULGARIS AT 1.0 ANGSTROMS WITH AND WITHOUT RESTRAINTS
 
Authors :  Z. Dauter, L. Sieker, K. Wilson
Date :  26 Aug 91  (Deposition) - 31 Oct 93  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Electron Transport(Iron) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Dauter, L. C. Sieker, K. S. Wilson
Refinement Of Rubredoxin From Desulfovibrio Vulgaris At 1. 0 A With And Without Restraints.
Acta Crystallogr. , Sect. B V. 48 42 1992
PubMed-ID: 1616692  |  Reference-DOI: 10.1107/S0108768191010613
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RUBREDOXIN
    Chains: A
    Engineered: YES
    Organism Scientific: DESULFOVIBRIO VULGARIS
    Organism Taxid: 881

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:6 , CYS A:9 , CYS A:39 , CYS A:42BINDING SITE FOR RESIDUE FE A 55
2AC2SOFTWARELYS A:3 , TRP A:37 , PRO A:45 , LYS A:46 , SER A:47 , HOH A:80 , HOH A:92 , HOH A:96 , HOH A:118 , HOH A:126 , HOH A:127BINDING SITE FOR RESIDUE SO4 A 56

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 8RXN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 8RXN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 8RXN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 8RXN)

(-) Exons   (0, 0)

(no "Exon" information available for 8RXN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:52
                                                                                   
               SCOP domains d8rxna_ A: Rubredoxin                                SCOP domains
               CATH domains 8rxnA00 A:1-52  [code=2.20.28.10, no name defined]   CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee......hhhh.....hhhhh...............eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  8rxn A  1 MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA 52
                                    10        20        30        40        50
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 8RXN)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  RUBR_DESVH | P00269
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUBR_DESVH | P00269: 1rb9 2kkd 2ql0 7rxn

(-) Related Entries Specified in the PDB File

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