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(-) Description

Title :  EXPOSURE OF RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS TO PEROXIDE, FIFTEEN SECOND TIME POINT.
 
Authors :  B. D. Dillard, J. M. Demick, M. W. W. Adams, W. N. Lanzilotta
Date :  25 Feb 11  (Deposition) - 22 Jun 11  (Release) - 10 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  A,B,G,H  (1x)
Biol. Unit 6:  C,D,E,F  (1x)
Keywords :  Rubrerythrin, Peroxide Reduction, Removal Of Reactive Oxygen Species, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. D. Dillard, J. M. Demick, M. W. Adams, W. N. Lanzilotta
A Cryo-Crystallographic Time Course For Peroxide Reduction By Rubrerythrin From Pyrococcus Furiosus.
J. Biol. Inorg. Chem. V. 16 949 2011
PubMed-ID: 21647777  |  Reference-DOI: 10.1007/S00775-011-0795-6

(-) Compounds

Molecule 1 - RUBRERYTHRIN
    Chains: A, B, C, D, E, F, G, H
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x): AB    GH
Biological Unit 6 (1x):   CDEF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 32)

Asymmetric Unit (3, 32)
No.NameCountTypeFull Name
2FE4Ligand/IonFE (III) ION
1FE224Ligand/IonFE (II) ION
3PEO4Ligand/IonHYDROGEN PEROXIDE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE26Ligand/IonFE (II) ION
3PEO1Ligand/IonHYDROGEN PEROXIDE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE26Ligand/IonFE (II) ION
3PEO1Ligand/IonHYDROGEN PEROXIDE
Biological Unit 3 (2, 7)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE26Ligand/IonFE (II) ION
3PEO1Ligand/IonHYDROGEN PEROXIDE
Biological Unit 4 (2, 7)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE26Ligand/IonFE (II) ION
3PEO1Ligand/IonHYDROGEN PEROXIDE
Biological Unit 5 (2, 14)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE212Ligand/IonFE (II) ION
3PEO2Ligand/IonHYDROGEN PEROXIDE
Biological Unit 6 (2, 14)
No.NameCountTypeFull Name
2FE-1Ligand/IonFE (III) ION
1FE212Ligand/IonFE (II) ION
3PEO2Ligand/IonHYDROGEN PEROXIDE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:80 , GLU A:83 , GLU A:114 , FE2 A:173 , GLU B:19 , GLU B:52 , FE2 B:173BINDING SITE FOR RESIDUE PEO A 1
02AC2SOFTWARECYS A:142 , CYS A:145 , CYS A:157 , CYS A:160BINDING SITE FOR RESIDUE FE2 A 172
03AC3SOFTWAREPEO A:1 , GLU A:80 , GLU A:114 , HIS A:117 , GLU B:52 , FE2 B:173BINDING SITE FOR RESIDUE FE2 A 173
04AC4SOFTWAREGLU A:19 , GLU A:52 , HIS A:55 , FE A:175 , GLU B:114BINDING SITE FOR RESIDUE FE2 A 174
05AC5SOFTWAREGLU A:19 , GLU A:52 , FE2 A:174 , GLU B:83 , GLU B:114 , FE2 B:174 , HOH B:204BINDING SITE FOR RESIDUE FE A 175
06AC6SOFTWARECYS B:142 , CYS B:145 , CYS B:157 , CYS B:160BINDING SITE FOR RESIDUE FE2 B 172
07AC7SOFTWAREPEO A:1 , GLU A:114 , FE2 A:173 , GLU B:19 , GLU B:52 , HIS B:55BINDING SITE FOR RESIDUE FE2 B 173
08AC8SOFTWAREGLU A:52 , FE A:175 , GLU B:80 , GLU B:114 , HIS B:117 , HOH B:204BINDING SITE FOR RESIDUE FE2 B 174
09AC9SOFTWAREGLU C:80 , GLU C:83 , GLU C:114 , FE2 C:175 , GLU D:19 , GLU D:52 , FE2 D:173BINDING SITE FOR RESIDUE PEO C 172
10BC1SOFTWARECYS C:142 , CYS C:145 , CYS C:157 , CYS C:160BINDING SITE FOR RESIDUE FE2 C 173
11BC2SOFTWAREGLU C:19 , GLU C:52 , HIS C:55 , GLU D:114 , FE D:175BINDING SITE FOR RESIDUE FE2 C 174
12BC3SOFTWAREGLU C:80 , GLU C:114 , HIS C:117 , PEO C:172 , GLU D:52BINDING SITE FOR RESIDUE FE2 C 175
13BC4SOFTWARECYS D:142 , CYS D:145 , CYS D:157 , CYS D:160BINDING SITE FOR RESIDUE FE2 D 172
14BC5SOFTWAREGLU C:114 , PEO C:172 , GLU D:19 , GLU D:52 , HIS D:55BINDING SITE FOR RESIDUE FE2 D 173
15BC6SOFTWAREGLU C:52 , GLU D:80 , GLU D:114 , HIS D:117 , FE D:175 , HOH D:197BINDING SITE FOR RESIDUE FE2 D 174
16BC7SOFTWAREGLU C:19 , GLU C:52 , FE2 C:174 , GLU D:83 , GLU D:114 , FE2 D:174 , HOH D:197BINDING SITE FOR RESIDUE FE D 175
17BC8SOFTWAREGLU E:80 , GLU E:83 , GLU E:114 , FE2 E:175 , GLU F:19 , GLU F:52 , FE2 F:173BINDING SITE FOR RESIDUE PEO E 172
18BC9SOFTWARECYS E:142 , CYS E:145 , CYS E:157 , CYS E:160BINDING SITE FOR RESIDUE FE2 E 173
19CC1SOFTWAREGLU E:19 , GLU E:52 , HIS E:55 , GLU F:114 , FE2 F:174 , FE F:175BINDING SITE FOR RESIDUE FE2 E 174
20CC2SOFTWAREGLU E:80 , GLU E:114 , HIS E:117 , PEO E:172 , GLU F:52BINDING SITE FOR RESIDUE FE2 E 175
21CC3SOFTWARECYS F:142 , CYS F:145 , CYS F:157 , CYS F:160BINDING SITE FOR RESIDUE FE2 F 172
22CC4SOFTWAREGLU E:114 , PEO E:172 , GLU F:19 , GLU F:52 , HIS F:55BINDING SITE FOR RESIDUE FE2 F 173
23CC5SOFTWAREGLU E:52 , FE2 E:174 , GLU F:80 , GLU F:114 , HIS F:117 , FE F:175 , HOH F:205BINDING SITE FOR RESIDUE FE2 F 174
24CC6SOFTWAREGLU E:19 , GLU E:52 , FE2 E:174 , GLU F:83 , GLU F:114 , FE2 F:174 , HOH F:205BINDING SITE FOR RESIDUE FE F 175
25CC7SOFTWAREGLU G:80 , GLU G:83 , GLU G:114 , FE2 G:174 , GLU H:19 , GLU H:52 , FE2 H:173BINDING SITE FOR RESIDUE PEO G 172
26CC8SOFTWARECYS G:142 , CYS G:145 , CYS G:157 , CYS G:160BINDING SITE FOR RESIDUE FE2 G 173
27CC9SOFTWAREGLU G:80 , GLU G:114 , HIS G:117 , PEO G:172 , GLU H:52BINDING SITE FOR RESIDUE FE2 G 174
28DC1SOFTWAREGLU G:19 , GLU G:52 , HIS G:55 , FE G:176 , GLU H:114BINDING SITE FOR RESIDUE FE2 G 175
29DC2SOFTWAREGLU G:19 , GLU G:52 , FE2 G:175 , GLU H:83 , GLU H:114 , FE2 H:174 , HOH H:196BINDING SITE FOR RESIDUE FE G 176
30DC3SOFTWARECYS H:142 , CYS H:145 , CYS H:157 , CYS H:160BINDING SITE FOR RESIDUE FE2 H 172
31DC4SOFTWAREGLU G:114 , PEO G:172 , GLU H:19 , GLU H:52 , HIS H:55BINDING SITE FOR RESIDUE FE2 H 173
32DC5SOFTWAREGLU G:52 , FE G:176 , GLU H:80 , GLU H:114 , HIS H:117 , HOH H:196BINDING SITE FOR RESIDUE FE2 H 174

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QVD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QVD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QVD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QVD)

(-) Exons   (0, 0)

(no "Exon" information available for 3QVD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvda1 A:2-134 automated matches                                                                                                    d3qvda2 A:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd A   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdb1 B:2-134 automated matches                                                                                                    d3qvdb2 B:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd B   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain C from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdc1 C:2-134 automated matches                                                                                                    d3qvdc2 C:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd C   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain D from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdd1 D:2-134 automated matches                                                                                                    d3qvdd2 D:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd D   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain E from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvde1 E:2-134 automated matches                                                                                                    d3qvde2 E:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd E   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain F from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdf1 F:2-134 automated matches                                                                                                    d3qvdf2 F:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd F   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain G from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdg1 G:2-134 automated matches                                                                                                    d3qvdg2 G:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd G   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain H from PDB  Type:PROTEIN  Length:170
 aligned with Q9UWP7_9EURY | Q9UWP7 from UniProtKB/TrEMBL  Length:171

    Alignment length:170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
         Q9UWP7_9EURY     2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
               SCOP domains d3qvdh1 H:2-134 automated matches                                                                                                    d3qvdh2 H:135-171 automated matches   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Rubrerythrin-3qvdH01 H:10-125                                                                                       ---------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------Rubrerythrin-3qvdH02 H:10-125                                                                                       ---------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------Rubrerythrin-3qvdH03 H:10-125                                                                                       ---------------------------------------------- Pfam domains (3)
           Pfam domains (4) --------Rubrerythrin-3qvdH04 H:10-125                                                                                       ---------------------------------------------- Pfam domains (4)
           Pfam domains (5) --------Rubrerythrin-3qvdH05 H:10-125                                                                                       ---------------------------------------------- Pfam domains (5)
           Pfam domains (6) --------Rubrerythrin-3qvdH06 H:10-125                                                                                       ---------------------------------------------- Pfam domains (6)
           Pfam domains (7) --------Rubrerythrin-3qvdH07 H:10-125                                                                                       ---------------------------------------------- Pfam domains (7)
           Pfam domains (8) --------Rubrerythrin-3qvdH08 H:10-125                                                                                       ---------------------------------------------- Pfam domains (8)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eee......eee............hhhhheee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qvd H   2 VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Fold: Ferritin-like (533)
(-)
Superfamily: Ferritin-like (489)
(-)
Family: Ferritin (232)
(-)
Protein domain: automated matches (70)
(-)
Pyrococcus furiosus [TaxId: 2261] (4)
1ad3qvda1A:2-134
1bd3qvdg1G:2-134
1cd3qvdh1H:2-134
1dd3qvdb1B:2-134
1ed3qvdc1C:2-134
1fd3qvdd1D:2-134
1gd3qvde1E:2-134
1hd3qvdf1F:2-134
(-)
Class: Small proteins (3458)
(-)
Fold: Rubredoxin-like (572)
(-)
Superfamily: Rubredoxin-like (127)
(-)
Family: automated matches (7)
(-)
Protein domain: automated matches (7)
(-)
Pyrococcus furiosus [TaxId: 2261] (4)
2ad3qvda2A:135-171
2bd3qvdg2G:135-171
2cd3qvdh2H:135-171
2dd3qvdb2B:135-171
2ed3qvdc2C:135-171
2fd3qvdd2D:135-171
2gd3qvde2E:135-171
2hd3qvdf2F:135-171

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QVD)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9UWP7_9EURY | Q9UWP7)
molecular function
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  3qvd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9UWP7_9EURY | Q9UWP7: 1nnq 2hr5 3mps 3pwf 3pza

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3QVD)