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(-) Description

Title :  STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
 
Authors :  T. Tsukihara, H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, S. Yoshikawa
Date :  18 Apr 96  (Deposition) - 07 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Keywords :  Cytochrome C Oxidase, Oxidoreductase (Cytochrome(C)-Oxygen) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tsukihara, H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, S. Yoshikawa
The Whole Structure Of The 13-Subunit Oxidized Cytochrome C Oxidase At 2. 8 A.
Science V. 272 1136 1996
PubMed-ID: 8638158
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE
    Chains: A, N
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 2 - CYTOCHROME C OXIDASE
    Chains: B, O
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 3 - CYTOCHROME C OXIDASE
    Chains: C, P
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 4 - CYTOCHROME C OXIDASE
    Chains: D, Q
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 5 - CYTOCHROME C OXIDASE
    Chains: E, R
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 6 - CYTOCHROME C OXIDASE
    Chains: F, S
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 7 - CYTOCHROME C OXIDASE
    Chains: G, T
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 8 - CYTOCHROME C OXIDASE
    Chains: H, U
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 9 - CYTOCHROME C OXIDASE
    Chains: I, V
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 10 - CYTOCHROME C OXIDASE
    Chains: J, W
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 11 - CYTOCHROME C OXIDASE
    Chains: K, X
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 12 - CYTOCHROME C OXIDASE
    Chains: L, Y
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE
 
Molecule 13 - CYTOCHROME C OXIDASE
    Chains: M, Z
    EC Number: 1.9.3.1
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: THIS ENZYME IS A MULTI COMPONENT PROTEIN COMPLEX AND IS A HOMO DIMER. ONE MONOMER IS COMPOSED OF 13 DIFFERENT SUBUNITS AND SIX METAL CENTERS, HEME A, HEME A3, CUA, CUB, MG AND ZN.
    Synonym: FERROCYTOCHROME C:OXYGEN OXIDOREDUCTASE
    Tissue: HEART MUSCLE

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1CU6Ligand/IonCOPPER (II) ION
2HEA4Ligand/IonHEME-A
3MG2Ligand/IonMAGNESIUM ION
4ZN2Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:240 , HIS A:290 , HIS A:291BINDING SITE FOR RESIDUE CU A 517
02AC2SOFTWAREHIS A:368 , ASP A:369 , GLU B:198BINDING SITE FOR RESIDUE MG A 518
03AC3SOFTWAREHIS B:161 , CYS B:196 , CYS B:200 , MET B:207 , CU B:229BINDING SITE FOR RESIDUE CU B 228
04AC4SOFTWARECYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , CU B:228BINDING SITE FOR RESIDUE CU B 229
05AC5SOFTWARECYS F:60 , CYS F:62 , CYS F:82 , CYS F:85BINDING SITE FOR RESIDUE ZN F 99
06AC6SOFTWAREHIS N:240 , HIS N:290 , HIS N:291BINDING SITE FOR RESIDUE CU N 517
07AC7SOFTWAREHIS N:368 , ASP N:369 , GLU O:198BINDING SITE FOR RESIDUE MG N 518
08AC8SOFTWAREHIS O:161 , CYS O:196 , CYS O:200 , MET O:207 , CU O:229BINDING SITE FOR RESIDUE CU O 228
09AC9SOFTWARECYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , CU O:228BINDING SITE FOR RESIDUE CU O 229
10BC1SOFTWARECYS S:60 , CYS S:62 , CYS S:82 , CYS S:85BINDING SITE FOR RESIDUE ZN S 99
11BC2SOFTWAREGLY A:27 , MET A:28 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , MET A:468BINDING SITE FOR RESIDUE HEA A 515
12BC3SOFTWARETRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ALA A:313 , THR A:316 , GLY A:317 , GLY A:352 , LEU A:353 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , HIS A:376 , PHE A:377 , VAL A:380 , ARG A:438BINDING SITE FOR RESIDUE HEA A 516
13BC4SOFTWAREGLY N:27 , MET N:28 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , ILE N:66 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , MET N:468BINDING SITE FOR RESIDUE HEA N 515
14BC5SOFTWARETRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ALA N:313 , THR N:316 , GLY N:317 , GLY N:352 , LEU N:353 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , HIS N:376 , PHE N:377 , VAL N:380 , ARG N:438BINDING SITE FOR RESIDUE HEA N 516

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:29 -H:64
2H:39 -H:53
3U:29 -U:64
4U:39 -U:53

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro A:130 -Pro A:131
2Cys A:498 -Pro A:499
3Trp C:116 -Pro C:117
4Pro N:130 -Pro N:131
5Cys N:498 -Pro N:499
6Trp P:116 -Pro P:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OCC)

(-) PROSITE Motifs  (10, 20)

Asymmetric/Biological Unit (10, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_TMPS50999 Cytochrome oxidase subunit II transmembrane region profile.COX2_BOVIN1-91
 		  2B:1-91
O:1-91
2COX1PS50855 Cytochrome oxidase subunit I profile.COX1_BOVIN1-514
 		  2A:1-514
N:1-514
3COX3PS50253 Heme-copper oxidase subunit III family profile.COX3_BOVIN4-261
 		  2C:4-261
P:4-261
4CHCHPS51808 Coiled coil-helix-coiled coil-helix (CHCH) domain profile.CX6B1_BOVIN27-73
 		  2H:26-72
U:26-72
5COX5B_2PS51359 Cytochrome c oxidase subunit Vb, zinc binding domain profile.COX5B_BOVIN32-129
 		  2F:1-98
S:1-98
6COX6APS01329 Cytochrome c oxidase subunit VIa signature.CX6A2_BOVIN67-84
 		  2G:55-72
T:55-72
7COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.COX2_BOVIN92-225
 		  2B:92-225
O:92-225
8COX5B_1PS00848 Cytochrome c oxidase subunit Vb, zinc binding region signature.COX5B_BOVIN100-122
 		  2F:69-91
S:69-91
9COX2PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.COX2_BOVIN159-207
 		  2B:159-207
O:159-207
10COX1_CUBPS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.COX1_BOVIN236-291
 		  2A:236-291
N:236-291

(-) Exons   (11, 22)

Asymmetric/Biological Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000187781ENSBTAE00000392730chr14:62538824-6253890885COX6C_BOVIN-00--
1.2ENSBTAT000000187782ENSBTAE00000152930chr14:62539837-62539968132COX6C_BOVIN1-37372I:1-36
V:1-36		36
36
1.3ENSBTAT000000187783ENSBTAE00000152932chr14:62540912-62541039128COX6C_BOVIN38-74372I:37-73
V:37-73		37
37
1.4ENSBTAT000000187784ENSBTAE00000382779chr14:62548625-62548744120COX6C_BOVIN-00--
2.1ENSBTAT000000198081ENSBTAE00000161251chr18:46232862-4623280261CX7A1_BOVIN1-550--
2.2ENSBTAT000000198082ENSBTAE00000161252chr18:46232104-4623201887CX7A1_BOVIN6-34292J:1-13
W:1-13		13
13
2.3ENSBTAT000000198083ENSBTAE00000161253chr18:46231883-4623179985CX7A1_BOVIN35-63292J:14-42
W:14-42		29
29
2.4ENSBTAT000000198084ENSBTAE00000161254chr18:46231418-46231281138CX7A1_BOVIN63-80182J:42-56
W:42-56		15
15
3.1ENSBTAT000000229491ENSBTAE00000344359chr21:33835267-33835426160COX5A_BOVIN1-36360--
3.2ENSBTAT000000229492ENSBTAE00000187373chr21:33840320-33840436117COX5A_BOVIN36-75402E:1-32
R:1-32		32
32
3.3ENSBTAT000000229493ENSBTAE00000187374chr21:33842603-33842724122COX5A_BOVIN75-115412E:32-72
R:32-72		41
41
3.4ENSBTAT000000229494ENSBTAE00000187376chr21:33843979-33844143165COX5A_BOVIN116-152372E:73-109
R:73-109		37
37
3.5ENSBTAT000000229495ENSBTAE00000187379chr21:33846054-33846214161COX5A_BOVIN-00--
4.1ENSBTAT000000260021ENSBTAE00000425992chr25:29305227-29305113115CX6A2_BOVIN1-25252G:1-13
T:1-13		13
13
4.2ENSBTAT000000260022ENSBTAE00000211646chr25:29304966-29304830137CX6A2_BOVIN25-70462G:13-58
T:13-58		46
46
4.3ENSBTAT000000260023ENSBTAE00000211652chr25:29304732-29304604129CX6A2_BOVIN71-97272G:59-84
T:59-84		26
26

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d1occa_ A: Mitochondrial cytochrome c oxidase, subunit I                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1occA00 A:1-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh.hhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: A:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: A:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ A   1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    


Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d1occb2 B:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d1occb1 B:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains 1occB01 B:1-91  [code=1.10.287.90, no name defined]                                        1occB02 B:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee....hhh..............eeee....eeeeeee....eeeeehhh.eeeee.....eeeee.....eeeee..............eeeeee.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: B:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: B:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: B:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ B   1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       


Chain C from PDB  Type:PROTEIN  Length:261
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
           COX3_BOVIN     1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d1occc_ C: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                            SCOP domains
               CATH domains 1occC01 C:1-70  [code=1.10.287.70, no name defined]                   1occC02 C:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh................hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---COX3  PDB: C:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ C   1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 


Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d1occd_ D: Mitochondrial cytochrome c oxidase subunit IV                                                                                         SCOP domains
               CATH domains 1occD00 D:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh......................hhhhhhhhhhh..hhh..hhhhhhhhhhh....hhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.hhhhhhhhhhhhh.........hhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1occ D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    


Chain E from PDB  Type:PROTEIN  Length:109
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:109
                                    53        63        73        83        93       103       113       123       133       143         
          COX5A_BOVIN    44 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d1occe_ E: Cytochrome c oxidase subunit E                                                                     SCOP domains
               CATH domains 1occE00 E:1-109  [code=1.25.40.40, no name defined]                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:1-32           ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) -------------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 1occ E   1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain F from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d1occf_ F: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 1occF00 F:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh..hhhhhhhhhhh.....................eeeee...eeeeee.........eeeeee....eee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: F:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: F:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1occ F   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        


Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d1occg_ G: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 1occG00 G:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhh.hhhhhhhhhhhhhh............................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: G:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 1occ G   1 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10        20        30        40        50        60        70        80    


Chain H from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d1occh_ H: Cytochrome c oxidase subunit h                                   SCOP domains
               CATH domains 1occH00 H:11-85 Cytochrome C oxidase subunit h                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: H:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1occ H  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     


Chain I from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d1occi_ I: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains 1occI00 I:1-73 Cytochrome C Oxidase, chain I                              CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:1-36 UniProt: 1-37 Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 1occ I   1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    10        20        30        40        50        60        70   


Chain J from PDB  Type:PROTEIN  Length:56
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:56
                                    31        41        51        61        71      
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  77
               SCOP domains d1occj_ J:                                               SCOP domains
               CATH domains 1occJ00 J:1-56 Cytochrome C Oxidase, chain J             CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       -------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4        Transcript 2 (2)
                 1occ J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  56
                                    10        20        30        40        50      


Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d1occk_ K:                                        SCOP domains
               CATH domains 1occK00 K:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1occ K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         


Chain L from PDB  Type:PROTEIN  Length:47
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:47
                                    26        36        46        56       
          COX7C_BOVIN    17 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d1occl_ L:                                      SCOP domains
               CATH domains 1occL00 L:1-47 Cytochrome C Oxidase, chain L    CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1occ L   1 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    10        20        30        40       


Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d1occm_ M:                                  SCOP domains
               CATH domains 1occM00 M:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 1occ M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   


Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d1occn_ N: Mitochondrial cytochrome c oxidase, subunit I                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1occN00 N:1-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATH domains
           Pfam domains (1) -----------COX1-1occN01 N:12-461                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------COX1-1occN02 N:12-461                                                                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------------------- Pfam domains (2)
         Sec.struct. author .hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhh.hhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: N:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: N:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ N   1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    


Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d1occo2 O:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d1occo1 O:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains 1occO01 O:1-91  [code=1.10.287.90, no name defined]                                        1occO02 O:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
           Pfam domains (1) COX2_TM-1occO03 O:1-83                                                             -----------COX2-1occO01 O:95-214                                                                                                   ------------- Pfam domains (1)
           Pfam domains (2) COX2_TM-1occO04 O:1-83                                                             -----------COX2-1occO02 O:95-214                                                                                                   ------------- Pfam domains (2)
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee....hhh..............eeee....eeeeeee....eeeeehhh.eeeee.....eeeee.....eeeee..............eeeeee.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: O:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: O:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: O:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ O   1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       


Chain P from PDB  Type:PROTEIN  Length:261
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
           COX3_BOVIN     1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d1occp_ P: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                            SCOP domains
               CATH domains 1occP01 P:1-70  [code=1.10.287.70, no name defined]                   1occP02 P:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
           Pfam domains (1) -----COX3-1occP01 P:6-261                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) -----COX3-1occP02 P:6-261                                                                                                                                                                                                                                             Pfam domains (2)
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh................hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---COX3  PDB: P:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1occ P   1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 


Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d1occq_ Q: Mitochondrial cytochrome c oxidase subunit IV                                                                                         SCOP domains
               CATH domains 1occQ00 Q:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
           Pfam domains (1) COX4-1occQ01 Q:4-146                                                                                                                           - Pfam domains (1)
           Pfam domains (2) COX4-1occQ02 Q:4-146                                                                                                                           - Pfam domains (2)
         Sec.struct. author ....hhhhh......................hhhhhhhhhhh..hhh..hhhhhhhhhhh....hhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.hhhhhhhhhhhhh.........hhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1occ Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    


Chain R from PDB  Type:PROTEIN  Length:109
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:109
                                    53        63        73        83        93       103       113       123       133       143         
          COX5A_BOVIN    44 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d1occr_ R: Cytochrome c oxidase subunit E                                                                     SCOP domains
               CATH domains 1occR00 R:1-109  [code=1.25.40.40, no name defined]                                                           CATH domains
           Pfam domains (1) COX5A-1occR01 R:1-108                                                                                       - Pfam domains (1)
           Pfam domains (2) COX5A-1occR02 R:1-108                                                                                       - Pfam domains (2)
         Sec.struct. author .......hhhhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:1-32           ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) -------------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 1occ R   1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain S from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d1occs_ S: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 1occS00 S:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
           Pfam domains (1) COX5B-1occS01 S:1-98                                                                               Pfam domains (1)
           Pfam domains (2) COX5B-1occS02 S:1-98                                                                               Pfam domains (2)
         Sec.struct. author ........hhhh..hhhhhhhhhhh.....................eeeee...eeeeee.........eeeeee....eee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: S:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: S:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1occ S   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        


Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d1occt_ T: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 1occT00 T:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
           Pfam domains (1) COX6A-1occT01 T:1-79                                                           ----- Pfam domains (1)
           Pfam domains (2) COX6A-1occT02 T:1-79                                                           ----- Pfam domains (2)
         Sec.struct. author ............hhhhhhhhhh.hhhhhhhhhhhhhh............................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: T:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 1occ T   1 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10        20        30        40        50        60        70        80    


Chain U from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d1occu_ U: Cytochrome c oxidase subunit h                                   SCOP domains
               CATH domains 1occU00 U:11-85 Cytochrome C oxidase subunit h                              CATH domains
           Pfam domains (1) -------COX6B-1occU01 U:18-82                                            --- Pfam domains (1)
           Pfam domains (2) -------COX6B-1occU02 U:18-82                                            --- Pfam domains (2)
         Sec.struct. author .......hhh.....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: U:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1occ U  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     


Chain V from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d1occv_ V: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains 1occV00 V:1-73 Cytochrome C Oxidase, chain I                              CATH domains
           Pfam domains (1) COX6C-1occV01 V:1-73                                                      Pfam domains (1)
           Pfam domains (2) COX6C-1occV02 V:1-73                                                      Pfam domains (2)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:1-36 UniProt: 1-37 Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 1occ V   1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    10        20        30        40        50        60        70   


Chain W from PDB  Type:PROTEIN  Length:56
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:56
                                    31        41        51        61        71      
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  77
               SCOP domains d1occw_ W:                                               SCOP domains
               CATH domains 1occW00 W:1-56 Cytochrome C Oxidase, chain J             CATH domains
           Pfam domains (1) -COX7a-1occW01 W:2-56                                    Pfam domains (1)
           Pfam domains (2) -COX7a-1occW02 W:2-56                                    Pfam domains (2)
         Sec.struct. author ....hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       -------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4        Transcript 2 (2)
                 1occ W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFP  56
                                    10        20        30        40        50      


Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d1occx_ X:                                        SCOP domains
               CATH domains 1occX00 X:6-54 Cytochrome C Oxidase, chain K      CATH domains
           Pfam domains (1) COX7B-1occX01 X:6-54                              Pfam domains (1)
           Pfam domains (2) COX7B-1occX02 X:6-54                              Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1occ X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         


Chain Y from PDB  Type:PROTEIN  Length:47
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:47
                                    26        36        46        56       
          COX7C_BOVIN    17 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d1occy_ Y:                                      SCOP domains
               CATH domains 1occY00 Y:1-47 Cytochrome C Oxidase, chain L    CATH domains
           Pfam domains (1) COX7C-1occY01 Y:1-47                            Pfam domains (1)
           Pfam domains (2) COX7C-1occY02 Y:1-47                            Pfam domains (2)
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1occ Y   1 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    10        20        30        40       


Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d1occz_ Z:                                  SCOP domains
               CATH domains 1occZ00 Z:1-43                              CATH domains
           Pfam domains (1) COX8-1occZ01 Z:1-43                         Pfam domains (1)
           Pfam domains (2) COX8-1occZ02 Z:1-43                         Pfam domains (2)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 1occ Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (14, 28)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Membrane and cell surface proteins and peptides (2046)
(-)
Fold: Cytochrome c oxidase subunit I-like (65)
(-)
Fold: Cytochrome c oxidase subunit III-like (29)
(-)
Fold: Single transmembrane helix (568)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit IV (26)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIa (25)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIc (25)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIIa (25)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIIb (26)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) (25)
(-)
Superfamily: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) (26)
(-)
Fold: Transmembrane helix hairpin (84)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (15, 30)

Asymmetric/Biological Unit
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (14, 28)

Asymmetric/Biological Unit
(-)
Clan: CHCH (11)
(-)
Clan: CU_oxidase (192)
(-)
Family: COX2 (19)
(-)
Bos taurus (Bovine) (9)
02aCOX2-1occO01O:95-214
02bCOX2-1occO02O:95-214
(-)
Clan: Rubredoxin (46)
(-)
Clan: no clan defined [family: COX1] (19)
(-)
Family: COX1 (19)
(-)
Bos taurus (Bovine) (9)
04aCOX1-1occN01N:12-461
04bCOX1-1occN02N:12-461
(-)
Clan: no clan defined [family: COX2_TM] (16)
(-)
Clan: no clan defined [family: COX3] (12)
(-)
Family: COX3 (12)
(-)
Clan: no clan defined [family: COX4] (9)
(-)
Clan: no clan defined [family: COX5A] (9)
(-)
Clan: no clan defined [family: COX6A] (9)
(-)
Clan: no clan defined [family: COX6C] (9)
(-)
Clan: no clan defined [family: COX7B] (9)
(-)
Clan: no clan defined [family: COX7C] (9)
(-)
Clan: no clan defined [family: COX7a] (9)
(-)
Clan: no clan defined [family: COX8] (9)

(-) Gene Ontology  (32, 127)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,N   (COX1_BOVIN | P00396)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006119    oxidative phosphorylation    The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain B,O   (COX2_BOVIN | P68530)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain C,P   (COX3_BOVIN | P00415)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0015002    heme-copper terminal oxidase activity    Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
biological process
    GO:0019646    aerobic electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain D,Q   (COX41_BOVIN | P00423)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain E,R   (COX5A_BOVIN | P00426)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain F,S   (COX5B_BOVIN | P00428)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain G,T   (CX6A2_BOVIN | P07471)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain H,U   (CX6B1_BOVIN | P00429)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain I,V   (COX6C_BOVIN | P04038)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain J,W   (CX7A1_BOVIN | P07470)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain K,X   (COX7B_BOVIN | P13183)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain L,Y   (COX7C_BOVIN | P00430)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain M,Z   (COX8B_BOVIN | P10175)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COX1_BOVIN | P00396: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX2_BOVIN | P68530: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX3_BOVIN | P00415: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5iy5 5luf 5xdq
        COX41_BOVIN | P00423: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5A_BOVIN | P00426: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5B_BOVIN | P00428: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX6C_BOVIN | P04038: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7B_BOVIN | P13183: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7C_BOVIN | P00430: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX8B_BOVIN | P10175: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6A2_BOVIN | P07471: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6B1_BOVIN | P00429: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX7A1_BOVIN | P07470: 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1OCC)