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(-) Description

Title :  ACTIN COMPLEX WITH A CHIMERA OF TROPOMODULIN-1 AND LEIOMODIN-1 ACTIN-BINDING SITE 2
 
Authors :  G. Rebowski, M. Boczkowska, R. Dominguez
Date :  09 Apr 15  (Deposition) - 21 Oct 15  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,G
Keywords :  Actin Nucleator, Atp-Actin, Protein Binding-Structural Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Boczkowska, G. Rebowski, E. Kremneva, P. Lappalainen, R. Domingue
How Leiomodin And Tropomodulin Use A Common Fold For Different Actin Assembly Functions.
Nat Commun V. 6 8314 2015
PubMed-ID: 26370058  |  Reference-DOI: 10.1038/NCOMMS9314

(-) Compounds

Molecule 1 - ACTIN, ALPHA SKELETAL MUSCLE
    Chains: A
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: ALPHA-ACTIN-1
 
Molecule 2 - GELSOLIN, TROPOMODULIN-1, LEIOMODIN-1 CHIMERA
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: GELSOLIN RESIDUES 12-136 (UNP), LINKER,TROPOMODULIN-1 RESIDUES 160-228 (UNP), LEIOMODIN-1 ACTIN-BINDING SITE 2 (UNP RESIDUES 364-486)
    Gene: GSN, TMOD1, D9S57E, TMOD, LMOD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AGEL, ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN,ERYTHROCYTE TROPOMODULIN, E-TMOD,64 KDA AUTOANTIGEN 1D, 64 KDA AUTOANTIGEN 1D3, 64 KDA AUTOANTIGEN D1, LEIOMODIN, MUSCLE FORM, SMOOTH MUSCLE LEIOMODIN, SM-LMOD, THYROID-ASSOCIATED OPHTHALMOPATHY AUTOANTIGEN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CA3Ligand/IonCALCIUM ION
3HIC1Mod. Amino Acid4-METHYL-HISTIDINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:402 , HOH A:513 , HOH A:527 , HOH A:552 , HOH A:574 , HOH A:579binding site for residue ATP A 401
2AC2SOFTWAREATP A:401 , HOH A:551 , HOH A:579binding site for residue CA A 402
3AC3SOFTWAREGLU A:167 , ASP G:85 , GLY G:90 , ALA G:92binding site for residue CA A 403
4AC4SOFTWAREGLY G:41 , ASP G:42 , GLU G:73 , VAL G:121 , HOH G:2121 , HOH G:2122binding site for residue CA G 2000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z94)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1His A:40 -Gln A:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z94)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z94)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z94)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee.......eeee..eeee..............eehhhhhhh...eeee..ee..ee.hhhhhhhhhhhhhhhh...hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh....eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhheeeehhhhh..hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhhhhhhhhh.eehhhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z94 A    5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEhGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374 
                                                                                               73-HIC                                                                                                                                                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh....eeeeeeee..eeee.hhhhh.eee...eeeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhh......eee....................hhhhhhhhhhh......eee.......hhhhhhhhhhhhh......eee......hhhhhhhhhhhhhhh....eee......hhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh.......eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z94 G    1 MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFGKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFALANTRADDHVAFAIAIMLKANKTITSLNLDSNHITGKGILAIFRALLQNNTLTELRFHNQRHICGGKTEMEIAKLLKENTTLLKLGYHFELAGPRMTVTNLLSRNMDKQRQKRLQEQRQAQ 1486
                                    10        20        30        40        50        60        70        80        90       100       110       120     |1174      1184      1194      1204      1214      1224    ||1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479       
                                                                                                                                                       126|                                                      1229|                                                                                                                         
                                                                                                                                                       1171                                                       1365
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z94)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z94)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z94)

(-) Gene Ontology  (92, 114)

Asymmetric/Biological Unit(hide GO term definitions)

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    His A:40 - Gln A:41   [ RasMol ]  
 

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  4z94
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  ACTS_RABIT | P68135
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  GELS_HUMAN | P06396
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  LMOD1_HUMAN | P29536
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  TMOD1_HUMAN | P28289
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTS_RABIT | P68135: 1alm 1atn 1eqy 1esv 1h1v 1ijj 1j6z 1kxp 1lcu 1lot 1m8q 1ma9 1mvw 1nwk 1o18 1o19 1o1a 1o1b 1o1c 1o1d 1o1e 1o1f 1o1g 1p8z 1qz5 1qz6 1rdw 1rfq 1rgi 1s22 1sqk 1t44 1uy5 1wua 1y64 1yxq 2a3z 2a40 2a41 2a42 2a5x 2asm 2aso 2asp 2d1k 2ff3 2ff6 2fxu 2gwj 2gwk 2hmp 2pav 2pbd 2q0r 2q0u 2q1n 2q31 2q36 2q97 2v51 2v52 2vcp 2vyp 2w49 2w4u 2y83 2yje 2yjf 2zwh 3b5u 3buz 3cjb 3cjc 3daw 3ffk 3g37 3hbt 3j4k 3j8a 3j8i 3j8j 3j8k 3jbi 3jbj 3jbk 3m1f 3m3n 3m6g 3mfp 3mn5 3sjh 3tpq 3tu5 3u8x 3u9z 3ue5 4a7f 4a7h 4a7l 4a7n 4b1v 4b1w 4b1x 4b1y 4b1z 4eah 4gy2 4h03 4h0t 4h0v 4h0x 4h0y 4k41 4k42 4k43 4pkg 4pkh 4pki 4pl8 4v0u 4wyb 5h53 5jlf 5kg8
        GELS_HUMAN | P06396: 1c0f 1c0g 1d4x 1dej 1eqy 1esv 1h1v 1kcq 1mdu 1nlv 1nm1 1nmd 1p8x 1p8z 1sol 1t44 1yag 1yvn 2ff3 2ff6 2fh1 2fh2 2fh3 2fh4 3a5l 3a5m 3a5n 3a5o 3ci5 3cip 3cjb 3cjc 3ffk 3ffn 3tu5 4pkg 4pkh 4pki 4s10 5dd2 5fae 5faf
        LMOD1_HUMAN | P29536: 4z79 4z8g
        TMOD1_HUMAN | P28289: 4pkg 4pkh 4pki 4z8g

(-) Related Entries Specified in the PDB File

4z8g