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(-) Description

Title :  THE STRUCTURE OF RABBIT SKELETAL MUSCLE ACTOMYOSIN RIGOR COMPLEX AT 5.2 ANGSTROM.
 
Authors :  T. Fujii, K. Namba
Date :  04 Nov 16  (Deposition) - 18 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Actin, Myosin, Muscle, Rigor Complex, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Fujii, K. Namba
Structure Of Actomyosin Rigour Complex At 5. 2 Angstrom Resolution And Insights Into The Atpase Cycle Mechanism
Nat Commun V. 8 13969 2017
PubMed-ID: 28067235  |  Reference-DOI: 10.1038/NCOMMS13969

(-) Compounds

Molecule 1 - SKELETAL MUSCLE MYOSIN HEAVY CHAIN MYHC-EO/IIL
    ChainsA
    FragmentUNP RESIDUES 1-845
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymUNCHARACTERIZED PROTEIN
 
Molecule 2 - MYOSIN REGULATORY LIGHT CHAIN 2, SKELETAL MUSCLE ISOFORM TYPE 1
    ChainsB
    FragmentUNP RESIDUES 25-170
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymDTNB,FAST SKELETAL MYOSIN LIGHT CHAIN 2,MLC-2
 
Molecule 3 - MYOSIN LIGHT CHAIN 1/3, SKELETAL MUSCLE ISOFORM
    ChainsC
    FragmentUNP RESIDUES 41-192
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymMLC1F/MLC3F,MYOSIN LIGHT CHAIN ALKALI 1/2,MYOSIN LIGHT CHAIN A1/A2
 
Molecule 4 - ACTIN, ALPHA SKELETAL MUSCLE
    ChainsD, E
    FragmentUNP RESIDUES 3-377
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymALPHA-ACTIN-1

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2HIC2Mod. Amino Acid4-METHYL-HISTIDINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER D:14 , GLY D:156 , ASP D:157 , GLY D:182 , LYS D:213 , GLU D:214 , GLY D:301 , GLY D:302 , THR D:303 , MET D:305 , TYR D:306 , LYS D:336binding site for residue ADP D 401
2AC2SOFTWAREGLY E:156 , ASP E:157 , GLY E:158 , LYS E:213 , GLU E:214 , GLY E:301 , GLY E:302 , THR E:303 , MET E:305 , TYR E:306 , LYS E:336binding site for residue ADP E 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H53)

(-) Cis Peptide Bonds  (13, 13)

Asymmetric/Biological Unit
No.Residues
1Leu A:218 -Glu A:219
2Ala A:323 -Ser A:324
3Lys A:572 -Gly A:573
4Gly A:636 -Ser A:637
5Phe A:762 -Gly A:763
6Arg B:42 -Asp B:43
7Met B:58 -Gly B:59
8Ile B:79 -Asn B:80
9Gly B:114 -Thr B:115
10Lys B:167 -Asp B:168
11Lys C:42 -Ile C:43
12Asn C:98 -Glu C:99
13Leu C:157 -Gly C:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H53)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H53)

(-) Exons   (0, 0)

(no "Exon" information available for 5H53)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:845
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh.hhhhhhhhhh........eeeee...eeeeeeeeee...eeeeee....eeeee...eee..hhhhh...hhhhh...hhhhhhhhhhhhhhh...eeee..eeee......hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.............eeeeeee........eeeeeee...hhhhhh.......hhhhhhhhh..hhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhheeeeeee..eeeee.hhhhhhhhhhhh.hhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhh...................eeeee..eeeee...hhhhhhh...hhhhhhhhh..hhhhhhhhhh.........................hhhhhhhhhhhhhhhhhh......eee............hhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhhhhhh.............hhhhhhhhhhhhhh.hhhhhee...eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h53 A   1 MSSDAEMAIFGEAAPYLRKPEKERIEAQNRPFDSKKACFAVDDKEMYVKGMIQSRENDKVTVKTLDDRTLTLNSDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGESGAGKTVNTKRVIQYFATIAVTGDKKKEQQPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPELIDLLLISTNPFDFPFVSQGEVTVASIDDSEELLATDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAGYLMGLNSAEMLKGLCCPRVKVGNEYVTKGQNVQQVTNSVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSALKLLSFLFSNYAGAEAGDSGGSKKGGKKKGSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQLRCNGVLEGIRICRKGFPSRILYADFKQRYRILNASAIPEGQFIDSKNASEKLLNSIDVDREQYRFGHTKVFFKAGLLGLLEEMRDEKLVTLMTRTQALCRGYLMRVEFKKMMERRDSIFCIQYNIRAFMNVKHWPWMNLFFKIKPLLK 845
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840     

Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.......hhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhh.........hhhhhhhhhhh.....hhhhhhhhhhhh........hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h53 B  25 QTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLITQCDRFSQEEIKNMWAAFSPDVGGNVDYKNICYVITHGDAKDQE 170
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164      

Chain C from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh......hhhhhh.......hhhhhhhhh.............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h53 C  41 IKIEFSKEQQDEFKEAFLLYDRTGDSKITLSQVGDVLRALGTNPTNAEVKKVLGNPSNEEMNAKKIEFEQFLPMLQAISNNKDQGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSID 193
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   

Chain D from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...eeeeee.......eeee.......................hhhhhh................hhhhhhhhhhhhhh.....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhhh...eeeeee....eeeeeee..ee.....eee..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....eee.....eee.hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhheeeehhhhh..hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhh..hhhhhheehhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h53 D   1 DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEhGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375
                                    10        20        30        40        50        60        70  |     80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370     
                                                                                                   73-HIC                                                                                                                                                                                                                                                                                                          

Chain E from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...eeeeee.......eeee.......................hhhhhh................hhhhhhhhhhhhhhh..........eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhhh...eeeeee....eeeeeee..ee...........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhh.......eee.....eee..hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhheeeehhhhh..hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhh...hhhhheehhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h53 E   1 DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEhGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375
                                    10        20        30        40        50        60        70  |     80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370     
                                                                                                   73-HIC                                                                                                                                                                                                                                                                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H53)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H53)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H53)

(-) Gene Ontology  (25, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Lys C:42 - Ile C:43   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTS_RABIT | P681351alm 1atn 1eqy 1esv 1h1v 1ijj 1j6z 1kxp 1lcu 1lot 1m8q 1ma9 1mvw 1nwk 1o18 1o19 1o1a 1o1b 1o1c 1o1d 1o1e 1o1f 1o1g 1p8z 1qz5 1qz6 1rdw 1rfq 1rgi 1s22 1sqk 1t44 1uy5 1wua 1y64 1yxq 2a3z 2a40 2a41 2a42 2a5x 2asm 2aso 2asp 2d1k 2ff3 2ff6 2fxu 2gwj 2gwk 2hmp 2pav 2pbd 2q0r 2q0u 2q1n 2q31 2q36 2q97 2v51 2v52 2vcp 2vyp 2w49 2w4u 2y83 2yje 2yjf 2zwh 3b5u 3buz 3cjb 3cjc 3daw 3ffk 3g37 3hbt 3j4k 3j8a 3j8i 3j8j 3j8k 3jbi 3jbj 3jbk 3m1f 3m3n 3m6g 3mfp 3mn5 3sjh 3tpq 3tu5 3u8x 3u9z 3ue5 4a7f 4a7h 4a7l 4a7n 4b1v 4b1w 4b1x 4b1y 4b1z 4eah 4gy2 4h03 4h0t 4h0v 4h0x 4h0y 4k41 4k42 4k43 4pkg 4pkh 4pki 4pl8 4v0u 4wyb 4z94 5jlf 5kg8

(-) Related Entries Specified in the PDB File

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