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(-) Description

Title :  N184K PATHOLOGICAL VARIANT OF GELSOLIN DOMAIN 2 (ORTHORHOMBIC FORM)
 
Authors :  F. Boni, M. Milani, S. Ricagno, M. Bolognesi, M. De Rosa
Date :  11 Dec 15  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Amyloidosis, Calcium, Mutation, Actin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Boni, M. Milani, R. Porcari, A. Barbiroli, S. Ricagno, M. De Rosa
Molecular Basis Of A Novel Renal Amyloidosis Due To N184K Gelsolin Variant.
Sci Rep V. 6 33463 2016
PubMed-ID: 27633054  |  Reference-DOI: 10.1038/SREP33463

(-) Compounds

Molecule 1 - GELSOLIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 178-293
    Gene: GSN
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: DOMAIN 2
    Synonym: AGEL,ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA2Ligand/IonCALCIUM ION
3CL2Ligand/IonCHLORIDE ION
4GOL3Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:186 , ASP A:187 , GLU A:209 , ASP A:259 , HOH A:462 , HOH A:520binding site for residue CA A 301
2AC2SOFTWAREVAL A:216 , GLY A:219 , ILE A:220 , ASN A:223 , GLU A:224binding site for residue GOL A 302
3AC3SOFTWAREGLU A:258 , HOH A:548 , HOH A:550binding site for residue CA A 303
4AC4SOFTWAREASN A:155 , GLU A:239 , LEU A:244 , PRO A:249 , LYS A:250 , HOH A:451 , HOH A:510binding site for residue GOL A 304
5AC5SOFTWARESER A:179 , GLU A:181 , GLN A:199 , CYS A:201 , ARG A:210 , THR A:214 , HOH A:403 , HOH A:410 , HOH A:411 , HOH A:418 , HOH A:437 , HOH A:448binding site for residue GOL A 305
6AC6SOFTWAREGLY A:148 , HIS A:151 , HIS A:232 , HOH A:526binding site for residue CL A 306
7AC7SOFTWAREGLY A:148 , HIS A:151 , HIS A:232 , HOH A:526binding site for residue CL A 307
8AC8SOFTWAREGLN A:164 , LYS A:166 , ASP A:187 , GLY A:256 , THR A:257 , HOH A:401binding site for residue ACT A 308

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:188 -A:201

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FAF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FAF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FAF)

(-) Exons   (0, 0)

(no "Exon" information available for 5FAF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.....eeeee..hhhhh....eeeee...eeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5faf A 148 GSHHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFKNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDT 260
                                   157       167       177       187       197       207       217       227       237       247       257
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FAF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FAF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FAF)

(-) Gene Ontology  (66, 66)

Asymmetric/Biological Unit(hide GO term definitions)

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  5faf
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  GELS_HUMAN | P06396
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GELS_HUMAN | P06396: 1c0f 1c0g 1d4x 1dej 1eqy 1esv 1h1v 1kcq 1mdu 1nlv 1nm1 1nmd 1p8x 1p8z 1sol 1t44 1yag 1yvn 2ff3 2ff6 2fh1 2fh2 2fh3 2fh4 3a5l 3a5m 3a5n 3a5o 3ci5 3cip 3cjb 3cjc 3ffk 3ffn 3tu5 4pkg 4pkh 4pki 4s10 4z94 5dd2 5fae

(-) Related Entries Specified in the PDB File

1kcq WILD-TYPE DOMAIN 2