2VYP - JenaLib

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:1376 , HOH A:2002 , HOH A:2063 , HOH A:2098 , HOH A:2137 , HOH A:2138 , HOH A:2139 , HOH A:2140	BINDING SITE FOR RESIDUE ATP A1375
02	AC2	SOFTWARE	ATP A:1375 , HOH A:2002 , HOH A:2003 , HOH A:2038 , HOH A:2140	BINDING SITE FOR RESIDUE CA A1376
03	AC3	SOFTWARE	GLU A:167 , GLN B:354 , TRP B:356 , GLU B:361	BINDING SITE FOR RESIDUE CA B1376
04	AC4	SOFTWARE	GLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , LYS B:213 , GLU B:214 , GLY B:301 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , CA B:1378 , HOH B:2021 , HOH B:2022 , HOH B:2061 , HOH B:2062	BINDING SITE FOR RESIDUE ATP B1377
05	AC5	SOFTWARE	ATP B:1377 , HOH B:2002 , HOH B:2016 , HOH B:2021 , HOH B:2062	BINDING SITE FOR RESIDUE CA B1378
06	AC6	SOFTWARE	ASP B:286 , ASP B:288	BINDING SITE FOR RESIDUE CA B1379
07	AC7	SOFTWARE	TYR A:133 , TYR A:143 , ALA A:144 , SER A:145 , GLY A:146 , ARG A:147 , THR A:148 , GLY A:168 , TYR A:169 , ILE A:345 , LEU A:346 , LEU A:349 , HEZ A:1378 , HOH A:2141 , HOH A:2142 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2146 , HOH A:2147 , HOH A:2148 , TYR B:143 , ALA B:144 , SER B:145 , GLY B:146 , ARG B:147 , GLY B:168 , TYR B:169 , ILE B:345 , LEU B:346 , THR B:351 , HOH B:2015	BINDING SITE FOR RESIDUE RH9 A1377
08	AC8	SOFTWARE	LEU A:349 , THR A:351 , RH9 A:1377 , HOH A:2129 , HOH A:2151 , GLU B:167 , TYR B:169 , PHE B:375	BINDING SITE FOR RESIDUE HEZ A1378
09	AC9	SOFTWARE	ASP A:24 , ASP A:25 , ALA A:26 , PRO A:27	BINDING SITE FOR RESIDUE HEZ A1379
10	BC1	SOFTWARE	PRO A:27 , HOH A:2152 , HOH A:2153	BINDING SITE FOR RESIDUE HEZ A1380

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 5)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:358
 aligned with ACTS_RABIT | P68135 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:370
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376
           ACTS_RABIT     7 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 376
               SCOP domains d2vypa1 A:5-146 Actin                                                                                                                         d2vypa2 A:147-374 Actin                                                                                                                                                                                                              SCOP domains
               CATH domains 2vypA01 A:5-136,A:335-374  [code=3            .30.420.40, no name defined]                                                          2vypA02 A:137-180,A:270-334                 2vypA03 A:181-269 Actin; Chain A, domain 4                                               2vypA02 A:137-180,A:270-334  [code=3.30.420.40, no name defined] 2vypA01 A:5-136,A:335-374                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee.......eeee..eee.------------..eehhhhhhh....eee..ee..ee.hhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh....eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhh.eeeehhhhh..hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhhhhhhh...eehhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------ACTINS_1   ----------------------------------------ACTINS_ACT_LI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTINS_2 ---------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vyp A   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP------------DSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 374
                                    14        24        34   |     -      | 54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
                                                            38           51

Chain B from PDB  Type:PROTEIN  Length:330
 aligned with ACTS_RABIT | P68135 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:370
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377
           ACTS_RABIT     8 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
               SCOP domains d2vypb1 B:6-146 Actin                                                                                                                        d2vypb2 B:147-375 Actin                                                                                                                                                                                                               SCOP domains
               CATH domains 2vypB01 B:6-136,B:335-375                                       [code=3.30.420.40, no name defined]                                2vypB02 B:137-180,B:270-334                 2vypB03 B:181-269 Actin; Chain A, domain 4                                               2vypB02 B:137-180,B:270-334  [code=3.30.420.40, no name defined] 2vypB01 B:6-136,B:335-375                 CATH domains
           Pfam domains (1) Actin-2vypB01 B:6-375                                                                                                                                                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) Actin-2vypB02 B:6-375                                                                                                                                                                                                                                                                                                                                                              Pfam domains (2)
         Sec.struct. author ..eeeee....eeeee.......eee.-------------------------------------.ee..ee..hhhhhhhhhhhhh.....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh....eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhh.---..eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhh.eeeehhhhh..hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhhhhhhh...eehhhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------ACTINS_1   ----------------------------------------ACTINS_ACT_LI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTINS_2 ----------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vyp B   6 TALVCDNGSGLVKAGFAGDDAPRAVFP-------------------------------------PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAAS---LEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375
                                    15        25      |  -         -         -         -    |   75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225      |  -|      245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                                     32                                    70                                                                                                                                                               232 236

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (2, 6)

Pfam Domains (1, 2)

Gene Ontology (17, 17)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ACTS_RABIT | P68135)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0048306	calcium-dependent protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0090131	mesenchyme migration	The process in which the population of cells that make up a mesenchyme undergo directed movement.
	GO:0010628	positive regulation of gene expression	Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0048741	skeletal muscle fiber development	The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
	GO:0030240	skeletal muscle thin filament assembly	The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle.
cellular component
	GO:0005884	actin filament	A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
	GO:0044297	cell body	The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0030175	filopodium	Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
	GO:0030027	lamellipodium	A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
	GO:0001725	stress fiber	A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber.
	GO:0005865	striated muscle thin filament	Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils.

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	Cis Peptide Bonds
		Arg A:196 - Gly A:197	[ RasMol ]
		Leu B:242 - Pro B:243	[ RasMol ]

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1alm	THE STRUCTURE OF THE ACTO-MYOSIN SUBFRAGMENT -ONE COMPLEX. RESULTS OF SEARCHES USING DATA FROM ELECTRON MICROSCOPY AND X-RAY CRYSTALLOGRAPHY. THEORETICAL MODEL, ALPHA CARBONS.
1atn	DEOXYRIBONUCLEASE I COMPLEX WITH ACTIN
1eqy	COMPLEX BETWEEN RABBIT MUSCLE ALPHA-ACTIN: HUMAN GELSOLIN DOMAIN 1
1esv	COMPLEX BETWEEN LATRUNCULIN A:RABBIT MUSCLE ALPHA ACTIN:HUMAN GELSOLIN DOMAIN 1
1h1v	GELSOLIN G4-G6/ACTIN COMPLEX
1ijj	THE X-RAY CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN RABBITSKELETAL MUSCLE ACTIN AND LATRUNCULIN A AT 2.85 ARESOLUTION
1j6z	UNCOMPLEXED ACTIN
1kxp	CRYSTAL STRUCTURE OF HUMAN VITAMIN D-BINDING PROTEIN INCOMPLEX WITH SKELETAL ACTIN
1lcu	POLYLYSINE INDUCES AN ANTIPARALLEL ACTIN DIMER THATNUCLEATES FILAMENT ASSEMBLY: CRYSTAL STRUCTURE AT 3.5 ARESOLUTION
1lot	CRYSTAL STRUCTURE OF THE COMPLEX OF ACTIN WITH VITAMIN D-BINDING PROTEIN
1m8q	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1ma9	CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN VITAMIN D BINDINGPROTEIN AND RABBIT MUSCLE ACTIN
1mvw	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1nwk	CRYSTAL STRUCTURE OF MONOMERIC ACTIN IN THE ATP STATE
1o18	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o19	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1a	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1b	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1c	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1d	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1e	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1f	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1o1g	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROMTOMOGRAMS OF INSECT FLIGHT MUSCLE
1p8z	COMPLEX BETWEEN RABBIT MUSCLE ALPHA-ACTIN: HUMAN GELSOLINRESIDUES VAL26-GLU156
1qz5	STRUCTURE OF RABBIT ACTIN IN COMPLEX WITH KABIRAMIDE C
1qz6	STRUCTURE OF RABBIT ACTIN IN COMPLEX WITH JASPISAMIDE A
1rdw	ACTIN CRYSTAL DYNAMICS: STRUCTURAL IMPLICATIONS FOR F-ACTINNUCLEATION, POLYMERIZATION AND BRANCHING MEDIATED BY THEANTI-PARALLEL DIMER
1rfq	ACTIN CRYSTAL DYNAMICS: STRUCTURAL IMPLICATIONS FOR F-ACTINNUCLEATION, POLYMERIZATION AND BRANCHING MEDIATED BY THEANTI-PARALLEL DIMER
1rgi	CRYSTAL STRUCTURE OF GELSOLIN DOMAINS G1-G3 BOUND TO ACTIN
1s22	ABSOLUTE STEREOCHEMISTRY OF ULAPUALIDE A
1sqk	CRYSTAL STRUCTURE OF CIBOULOT IN COMPLEX WITH SKELETAL ACTIN
1t44	STRUCTURAL BASIS OF ACTIN SEQUESTRATION BY THYMOSIN-B4:IMPLICATIONS FOR ARP2/3 ACTIVATION
1uy5	A MODEL OF THYMOSIN_BETA4 BOUND TO MONOMERIC ACTIN USING NMR AND BIOCHEMICAL DATA.
1wua	THE STRUCTURE OF APLYRONINE A-ACTIN COMPLEX
1y64	BNI1P FORMIN HOMOLOGY 2 DOMAIN COMPLEXED WITH ATP-ACTIN
2a3z	TERNARY COMPLEX OF THE WH2 DOMAIN OF WASP WITH ACTIN-DNASE I
2a40	TERNARY COMPLEX OF THE WH2 DOMAIN OF WAVE WITH ACTIN-DNASE I
2a41	TERNARY COMPLEX OF THE WH2 DOMAIN OF WIP WITH ACTIN-DNASE I
2a42	ACTIN-DNASE I COMPLEX
2a5x	CRYSTAL STRUCTURE OF A CROSS-LINKED ACTIN DIMER
2asm	STRUCTURE OF RABBIT ACTIN IN COMPLEX WITH REIDISPONGIOLIDE A
2aso	STRUCTURE OF RABBIT ACTIN IN COMPLEX WITH SPHINXOLIDE B
2asp	STRUCTURE OF RABBIT ACTIN IN COMPLEX WITH REIDISPONGIOLIDE C
2d1k	TERNARY COMPLEX OF THE WH2 DOMAIN OF MIM WITH ACTIN-DNASE I
2ff3	CRYSTAL STRUCTURE OF GELSOLIN DOMAIN 1:N- WASP V2 MOTIFHYBRID IN COMPLEX WITH ACTIN
2ff6	CRYSTAL STRUCTURE OF GELSOLIN DOMAIN 1: CIBOULOT DOMAIN 2HYBRID IN COMPLEX WITH ACTIN
2fxu	X-RAY STRUCTURE OF BISTRAMIDE A- ACTIN COMPLEX AT 1.35 ARESOLUTION.
2vcp	CRYSTAL STRUCTURE OF N-WASP VC DOMAIN IN COMPLEX WITH SKELETAL ACTIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)