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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  RIGOR MYOSIN X CO-COMPLEXED WITH AN ACTIN FILAMENT
 
Authors :  C. V. Sindelar, A. Houdusse, L. Sweeney
Date :  12 Jun 16  (Deposition) - 07 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  9.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Myosin Molecular Motors Cytoskeletal Motility, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Ropars, Z. Yang, T. Isabet, F. Blanc, K. Zhou, T. Lin, X. Liu, P. Hissier, F. Samazan, B. Amigues, E. D. Yang, H. Park, O. Pylypenko, M. Cecchini, C. V. Sindelar, H. L. Sweeney, A. Houdusse
The Myosin X Motor Is Optimized For Movement On Actin Bundles.
Nat Commun V. 7 12456 2016
PubMed-ID: 27580874  |  Reference-DOI: 10.1038/NCOMMS12456

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-X
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MOTOR DOMAIN (UNP RESIDUES 3-741)
    Gene: MYO10, KIAA0799
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UNCONVENTIONAL MYOSIN-10
 
Molecule 2 - ACTIN, ALPHA SKELETAL MUSCLE
    Chains: B, C, D
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: ALPHA-ACTIN-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5KG8)

(-) Sites  (0, 0)

(no "Site" information available for 5KG8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KG8)

(-) Cis Peptide Bonds  (27, 27)

Asymmetric/Biological Unit
No.Residues
1Gln A:52 -Lys A:53
2Tyr A:93 -Thr A:94
3Arg A:381 -Gly A:382
4Gly B:15 -Leu B:16
5Gly B:23 -Asp B:24
6Gly B:46 -Met B:47
7Gly B:55 -Asp B:56
8Asp B:157 -Gly B:158
9Glu B:167 -Gly B:168
10Ile B:309 -Ala B:310
11Ser B:350 -Thr B:351
12Gly C:15 -Leu C:16
13Gly C:23 -Asp C:24
14Gly C:46 -Met C:47
15Gly C:55 -Asp C:56
16Asp C:157 -Gly C:158
17Glu C:167 -Gly C:168
18Ile C:309 -Ala C:310
19Ser C:350 -Thr C:351
20Gly D:15 -Leu D:16
21Gly D:23 -Asp D:24
22Gly D:46 -Met D:47
23Gly D:55 -Asp D:56
24Asp D:157 -Gly D:158
25Glu D:167 -Gly D:168
26Ile D:309 -Ala D:310
27Ser D:350 -Thr D:351

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KG8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KG8)

(-) Exons   (0, 0)

(no "Exon" information available for 5KG8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:677
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..eeeeeeeeeee..eeeeee....eeeee.hhh.....ee........hhhhh...hhhhhhhhhhhhhhhh....ee..eeeee..................hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh..hhhhhhhhheeee..eeeee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh.hhhhhhhhh.ee..ee..ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh....ee.........eee....eee....hhhhhhh...hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhh......hhhhhhhhhhhhhh.....eee...eeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kg8 A   3 NFFTEGTRVWLRENGQHFPSTVNSCAEGIVVFRTDYGQVFTYKQSTITHQKVTAMHPTNEEDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASVNPYQMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESGAGKTESTKLILKFLSVISLESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNQSGCVEDKTISDQESFREVITAMDVMQFSKEEVREVSRLLAGILHLGNIEFITAGGAQVSFKTALGRSAELLGLDPTQLTDALTQRSMFLRGEEILTPLNVQQAVDSRDSLAMALYACCFEWVIKKINSRIIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDWIDNGECLDLIEKKLGLLALINEESHFPQATDSTLLEKLHSQHANNHFYVKPRVAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAAVRRPFQDFYKRYKVLMRNLALPEDVRGKCTSLLQLYDASNSEWQLGKTKVFLRESLEQKLEKRR 738
                                    12        22        32        42        52        62||      74        84        94       104  ||   124       134       144       154       164       174   ||  203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581      |609       619       629       639       649       659       669 ||    681       691       701       711       721       731       
                                                                                       63|                                      107|                                                         178|                                                                                                                                                                                                                            421|                                                                                                                                                           588|                                                             671|                                                                
                                                                                        66                                       118                                                          198                                                                                                                                                                                                                             430                                                                                                                                                            607                                                              674                                                                


Chain B from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeee.......eee...eee...............ee.hhhhh.....eee.........hhhhhhhhhhhhhhhh..........ee...hhhhhhhhh..........hhhhhh......eeeeeee..eeeeeee....................hhhhhhhhhhh......hhhhhhhhhh......eeee.....eeee.hhhhhhhhh............hhhhhhhh....hhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kg8 B   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIECGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371
                                    14        24        34        44        54        64        74        84        94       104  ||   124       134       144       154       164       174   ||  203       213       223       233       243       253       263       273      |308       318       328       338       348       358       368   
                                                                                                                                107|                                                         178|                                                                               280|                                                                 
                                                                                                                                 118                                                          198                                                                                306                                                                 


Chain C from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeee.......eee...eee..................hhhhhh....eee.........hhhhhhhhhhhhhhhh...........eee.hhhhhhhhh......eeehhhhh........eeeeeee..eeeeeee....................hhhhhhhhhhh......hhhhhhhhhh......eeee.....eeee.hhhhhhhhh............hhhhhhhh....hhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kg8 C   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIECGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371
                                    14        24        34        44        54        64        74        84        94       104  ||   124       134       144       154       164       174   ||  203       213       223       233       243       253       263       273      |308       318       328       338       348       358       368   
                                                                                                                                107|                                                         178|                                                                               280|                                                                 
                                                                                                                                 118                                                          198                                                                                306                                                                 


Chain D from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeee.......eee...eee...............ee.hhhhh.....eee.........hhhhhhhhhhhhhhhh...........eee.hhhhhhhhh......eee.hhhhhh......eeeeeee..eeeeeee.................hhhhhhhhhhhhhh......hhhhhhhhhh......eeee.....eeee.hhhhhhhhh............hhhhhhhh....hhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kg8 D   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIECGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371
                                    14        24        34        44        54        64        74        84        94       104  ||   124       134       144       154       164       174   ||  203       213       223       233       243       253       263       273      |308       318       328       338       348       358       368   
                                                                                                                                107|                                                         178|                                                                               280|                                                                 
                                                                                                                                 118                                                          198                                                                                306
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KG8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KG8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KG8)

(-) Gene Ontology  (44, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Arg A:381 - Gly A:382   [ RasMol ]  
    Asp B:157 - Gly B:158   [ RasMol ]  
    Asp C:157 - Gly C:158   [ RasMol ]  
    Asp D:157 - Gly D:158   [ RasMol ]  
    Gln A:52 - Lys A:53   [ RasMol ]  
    Glu B:167 - Gly B:168   [ RasMol ]  
    Glu C:167 - Gly C:168   [ RasMol ]  
    Glu D:167 - Gly D:168   [ RasMol ]  
    Gly B:15 - Leu B:16   [ RasMol ]  
    Gly B:23 - Asp B:24   [ RasMol ]  
    Gly B:46 - Met B:47   [ RasMol ]  
    Gly B:55 - Asp B:56   [ RasMol ]  
    Gly C:15 - Leu C:16   [ RasMol ]  
    Gly C:23 - Asp C:24   [ RasMol ]  
    Gly C:46 - Met C:47   [ RasMol ]  
    Gly C:55 - Asp C:56   [ RasMol ]  
    Gly D:15 - Leu D:16   [ RasMol ]  
    Gly D:23 - Asp D:24   [ RasMol ]  
    Gly D:46 - Met D:47   [ RasMol ]  
    Gly D:55 - Asp D:56   [ RasMol ]  
    Ile B:309 - Ala B:310   [ RasMol ]  
    Ile C:309 - Ala C:310   [ RasMol ]  
    Ile D:309 - Ala D:310   [ RasMol ]  
    Ser B:350 - Thr B:351   [ RasMol ]  
    Ser C:350 - Thr C:351   [ RasMol ]  
    Ser D:350 - Thr D:351   [ RasMol ]  
    Tyr A:93 - Thr A:94   [ RasMol ]  
 

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  5kg8
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  ACTS_RABIT | P68135
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  MYO10_HUMAN | Q9HD67
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTS_RABIT | P68135: 1alm 1atn 1eqy 1esv 1h1v 1ijj 1j6z 1kxp 1lcu 1lot 1m8q 1ma9 1mvw 1nwk 1o18 1o19 1o1a 1o1b 1o1c 1o1d 1o1e 1o1f 1o1g 1p8z 1qz5 1qz6 1rdw 1rfq 1rgi 1s22 1sqk 1t44 1uy5 1wua 1y64 1yxq 2a3z 2a40 2a41 2a42 2a5x 2asm 2aso 2asp 2d1k 2ff3 2ff6 2fxu 2gwj 2gwk 2hmp 2pav 2pbd 2q0r 2q0u 2q1n 2q31 2q36 2q97 2v51 2v52 2vcp 2vyp 2w49 2w4u 2y83 2yje 2yjf 2zwh 3b5u 3buz 3cjb 3cjc 3daw 3ffk 3g37 3hbt 3j4k 3j8a 3j8i 3j8j 3j8k 3jbi 3jbj 3jbk 3m1f 3m3n 3m6g 3mfp 3mn5 3sjh 3tpq 3tu5 3u8x 3u9z 3ue5 4a7f 4a7h 4a7l 4a7n 4b1v 4b1w 4b1x 4b1y 4b1z 4eah 4gy2 4h03 4h0t 4h0v 4h0x 4h0y 4k41 4k42 4k43 4pkg 4pkh 4pki 4pl8 4v0u 4wyb 4z94 5h53 5jlf
        MYO10_HUMAN | Q9HD67: 2lw9 3au4 3au5 3pzd 5i0h 5i0i

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5KG8)