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Class: Alpha and beta proteins (a/b) (23833)
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Fold: Restriction endonuclease-like (209)
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Superfamily: Restriction endonuclease-like (170)
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Family: automated matches (3)
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Protein domain: automated matches (3)
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Archaeoglobus fulgidus [TaxId: 2234] (2)
2WCWA:; B:; C:; D:1.6A RESOLUTION STRUCTURE OF ARCHAEOGLOBUS FULGIDUS HJC, A HOLLIDAY JUNCTION RESOLVASE FROM AN ARCHAEAL HYPERTHERMOPHILE
2WCZA:; B:1.6A RESOLUTION STRUCTURE OF ARCHAEOGLOBUS FULGIDUS HJC, A HOLLIDAY JUNCTION RESOLVASE FROM AN ARCHAEAL HYPERTHERMOPHILE
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Escherichia coli K-12 [TaxId: 83333] (1)
3C0UA:; B:CRYSTAL STRUCTURE OF E.COLI YAEQ PROTEIN
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Family: Cfr10I/Bse634I (5)
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Protein domain: Restriction endonuclease Bse634I (4)
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Bacillus stearothermophilus [TaxId: 1422] (4)
1KNVA:; B:BSE634I RESTRICTION ENDONUCLEASE
3V1ZA:; B:CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE BSE634I WITH COGNATE DNA
3V20A:; B:CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE BSE634I WITH COGNATE DNA
3V21A:; E:; F:; G:; H:; B:; C:; D:CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE BSE634I WITH COGNATE DNA
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Protein domain: Restriction endonuclease Cfr10I (1)
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Citrobacter freundii [TaxId: 546] (1)
1CFRA:CRYSTAL STRUCTURE OF CITROBACTER FREUNDII RESTRICTION ENDONUCLEASE CFR10I AT 2.15 ANGSTROMS RESOLUTION.
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Family: DNA mismatch repair protein MutH from (4)
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Protein domain: automated matches (2)
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Haemophilus influenzae [TaxId: 727] (2)
2AOQA:CRYSTAL STRUCTURE OF MUTH-UNMETHYLATED DNA COMPLEX
2AORA:; B:CRYSTAL STRUCTURE OF MUTH-HEMIMETHYLATED DNA COMPLEX
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Protein domain: DNA mismatch repair protein MutH from (2)
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Escherichia coli [TaxId: 562] (2)
1AZOA:DNA MISMATCH REPAIR PROTEIN MUTH FROM E. COLI
2AZOA:; B:DNA MISMATCH REPAIR PROTEIN MUTH FROM E. COLI
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Family: Endonuclease I (Holliday junction resolvase) (5)
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Protein domain: automated matches (2)
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Bacteriophage T7 [TaxId: 10760] (1)
3CAEA:; B:; C:; D:; E:; F:; G:; H:; I:; J:STRUCTURE OF NNQQNY AS AN INSERT IN T7 ENDONUCLEASE I
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Enterobacteria phage [TaxId: 10760] (1)
2PFJA:; B:CRYSTAL STRUCTURE OF T7 ENDO I RESOLVASE IN COMPLEX WITH A HOLLIDAY JUNCTION
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Protein domain: Endonuclease I (Holliday junction resolvase) (3)
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Bacteriophage T7 [TaxId: 10760] (3)
1FZRA:; B:; C:; D:CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I
1M0DA:; B:; C:; D:CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I WITH A WILD-TYPE ACTIVE SITE AND BOUND MANGANESE IONS
1M0IA:; C:; D:; B:CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I WITH A WILD-TYPE ACTIVE SITE
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Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain (1)
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Protein domain: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain (1)
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Escherichia coli [TaxId: 562] (1)
1W36B:899-1174; E:899-1174RECBCD:DNA COMPLEX
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Family: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain (1)
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Protein domain: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain (1)
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Escherichia coli [TaxId: 562] (1)
1W36C:818-1121; F:818-1121RECBCD:DNA COMPLEX
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Family: Hjc-like (6)
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Protein domain: Archaeal Holliday junction resolvase Hjc (3)
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Pyrococcus furiosus [TaxId: 2261] (2)
1GEFA:; B:; D:; E:CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC
1IPIA:; B:CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC FROM PYROCOCCUS FURIOSUS FORM II
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Sulfolobus solfataricus [TaxId: 2287] (1)
1HH1A:THE STRUCTURE OF HJC, A HOLLIDAY JUNCTION RESOLVING ENZYME FROM SULFOLOBUS SOLFATARICUS
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Protein domain: automated matches (1)
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Sulfolobus tokodaii [TaxId: 273063] (1)
2EO0A:; B:CRYSTAL STRUCTURE OF HOLLIDAY JUNCTION RESOLVASE ST1444
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Protein domain: Holliday-junction resolvase SSO1176 (2)
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Sulfolobus solfataricus [TaxId: 2287] (2)
1OB8A:; B:HOLLIDAY JUNCTION RESOLVING ENZYME
1OB9A:HOLLIDAY JUNCTION RESOLVING ENZYME
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Family: Hypothetical protein TT1808 (TTHA1514) (1)
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Protein domain: Hypothetical protein TT1808 (TTHA1514) (1)
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Thermus thermophilus [TaxId: 274] (1)
1WDJA:; B:; C:CRYSTAL STRUCTURE OF TT1808 FROM THERMUS THERMOPHILUS HB8
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Family: Hypothetical protein VC1899 (1)
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Protein domain: Hypothetical protein VC1899 (1)
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Vibrio cholerae [TaxId: 666] (1)
1XMXA:CRYSTAL STRUCTURE OF PROTEIN VC1899 FROM VIBRIO CHOLERAE
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Family: lambda exonuclease (3)
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Protein domain: lambda exonuclease (3)
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Bacteriophage lambda [TaxId: 10710] (3)
1AVQA:; B:; C:TOROIDAL STRUCTURE OF LAMBDA EXONUCLEASE DETERMINED AT 2.4 ANGSTROMS
3SLPA:; B:; C:CRYSTAL STRUCTURE OF LAMBDA EXONUCLEASE IN COMPLEX WITH A 12 BP SYMMETRIC DNA DUPLEX
3SM4A:; B:; C:CRYSTAL STRUCTURE OF THE K131A MUTANT OF LAMBDA EXONUCLEASE IN COMPLEX WITH A 5'-PHOSPHORYLATED 14-MER/12-MER DUPLEX AND MAGNESIUM
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Family: MRR-like (1)
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Protein domain: Hypothetical protein AF1548, N-terminal domain (1)
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Archaeoglobus fulgidus [TaxId: 2234] (1)
1Y88A:3-127CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION AF1548
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Family: PA N-terminal domain (25)
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Protein domain: automated matches (1)
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Influenza A virus [TaxId: 11320] (1)
2W69A:; B:; D:INFLUENZA POLYMERASE FRAGMENT
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Protein domain: PA N-terminal domain (24)
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Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958] (11)
4KILA:7-(4-FLUOROPHENYL)-3-HYDROXYQUINOLIN-2(1H)-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE
4LN7A:5,6-BIS(4-FLUOROPHENYL)-3-HYDROXY-2,5-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE
4M4QA:6-(4-FLUOROPHENYL)-3-HYDROXY-5-[4-(1H-1,2,3,4-TETRAZOL-5-YL)PHENYL] - 1,2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE
4M5OA:3-HYDROXY-6-PHENYL-1,2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE
4M5QA:HIGH-RESOLUTION APO INFLUENZA 2009 H1N1 ENDONUCLEASE STRUCTURE
4M5RA:HIGH-RESOLUTION INFLUENZA 2009 H1N1 ENDONUCLEASE BOUND TO 4-(1H-IMIDAZOL-1-YL)PHENOL
4M5UA:5-(4-FLUOROPHENYL)-3-HYDROXY-6-[4-(1H-1,2,3,4-TETRAZOL-5-YL)PHENYL]-1, 2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE
4M5VA:INFLUENZA 2009 H1N1 ENDONUCLEASE WITH 100 MILLIMOLAR CALCIUM
4MK1A:5-BROMOPYRIDINE-2,3-DIOL BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE
4MK2A:3-(5-HYDROXY-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)BENZONITRILE BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE
4MK5A:6-(3-METHOXYPHENYL)PYRIDINE-2,3-DIOL BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE
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Influenza A virus [TaxId: 93838] (13)
3EBJA:; B:; C:; D:CRYSTAL STRUCTURE OF AN AVIAN INFLUENZA VIRUS PROTEIN
3HW3A:; C:; D:; B:THE CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PA_N IN COMPLEX WITH UMP
3HW4A:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA A VIRUS IN COMPLEX WITH TMP
3HW5A:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PA_N IN COMPLEX WITH AMP
3HW6A:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PA_N IN COMPLEX WITH MN
4E5EA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN APO
4E5FA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 1
4E5GA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 2
4E5HA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 3
4E5IA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 4
4E5JA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 5
4E5LA:; B:; C:; D:CRYSTAL STRUCTURE OF AVIAN INFLUENZA VIRUS PAN BOUND TO COMPOUND 6
4NFZA:; B:; C:CRYSTAL STRUCTURE OF POLYMERASE SUBUNIT PA N-TERMINAL ENDONUCLEASE DOMAIN FROM BAT-DERIVED INFLUENZA VIRUS H17N10
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Family: PA4535-like (1)
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Protein domain: Hypothetical protein PA4535 (1)
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Pseudomonas aeruginosa [TaxId: 287] (1)
1Y0KA:1-209STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION PA4535 FROM PSEUDOMONAS AERUGINOSA STRAIN PAO1, MONOOXYGENASE SUPERFAMILY
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Family: RecU-like (4)
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Protein domain: automated matches (2)
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Bacillus subtilis [TaxId: 1423] (1)
1ZP7A:; B:THE STRUCTURE OF BACILLUS SUBTILIS RECU HOLLIDAY JUNCTION RESOLVASE AND ITS ROLE IN SUBSTRATE SELECTION AND SEQUENCE SPECIFIC CLEAVAGE.
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Geobacillus kaustophilus [TaxId: 235909] (1)
2FCOA:; B:CRYSTAL STRUCTURE OF BACILLUS STEAROTHERMOPHILUS PRFA-HOLLIDAY JUNCTION RESOLVASE
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Protein domain: Recombination protein U (RecU)/PBP related factor A (PrfA) (2)
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Bacillus stearothermophilus [TaxId: 1422] (1)
1Y1OA:; B:; C:; D:X-RAY CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN-RELATED FACTOR A FROM BACILLUS STEAROTHERMOPHILUS
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Bacillus subtilis [TaxId: 1423] (1)
1RZNA:; B:CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN-RELATED FACTOR A FROM BACILLUS SUBTILIS.
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Family: Restriction endonuclease BamHI (5)
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Protein domain: Restriction endonuclease BamHI (5)
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Bacillus amyloliquefaciens [TaxId: 1390] (5)
1BAMA:STRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSIS
1BHMA:; B:RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA
1ESGA:; B:RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA.
2BAMA:; B:RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX).
3BAMA:; B:RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)
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Family: Restriction endonuclease BglI (1)
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Protein domain: Restriction endonuclease BglI (1)
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Bacillus subtilis [TaxId: 1423] (1)
1DMUA:CRYSTAL STRUCTURE OF THE RESTRICTION ENDONUCLEASE BGLI (E.C.3.1.21.4) BOUND TO ITS DNA RECOGNITION SEQUENCE
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Family: Restriction endonuclease BglII (3)
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Protein domain: Restriction endonuclease BglII (3)
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Bacillus subtilis [TaxId: 1423] (3)
1D2IA:; B:CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER
1DFMA:; B:CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER
1ES8A:CRYSTAL STRUCTURE OF FREE BGLII
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Family: Restriction endonuclease BsobI (1)
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Protein domain: Restriction endonuclease BsobI (1)
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Bacillus stearothermophilus [TaxId: 1422] (1)
1DC1A:; B:RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD
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Family: Restriction endonuclease BstyI (3)
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Protein domain: Restriction endonuclease BstyI (3)
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Geobacillus stearothermophilus [TaxId: 1422] (3)
1SDOA:CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BSTYI
1VRRA:; B:CRYSTAL STRUCTURE OF THE RESTRICTION ENDONUCLEASE BSTYI COMPLEX WITH DNA
2P0JA:; B:STRUCTURE OF RESTRICTION ENDONUCLEASE BSTYI BOUND TO NON-COGNATE DNA
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Family: Restriction endonuclease EcoO109IR (2)
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Protein domain: Restriction endonuclease EcoO109IR (2)
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Escherichia coli [TaxId: 562] (2)
1WTDA:; B:CRYSTAL STRUCTURE OF TYPE II RESTRCITION ENDONUCLEASE, ECOO109I DNA-FREE FORM
1WTEA:; B:CRYSTAL STRUCTURE OF TYPE II RESTRCITION ENDONUCLEASE, ECOO109I COMPLEXED WITH COGNATE DNA
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Family: Restriction endonuclease EcoRI (8)
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Protein domain: automated matches (1)
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Escherichia coli [TaxId: 562] (1)
2OXVA:STRUCTURE OF THE A138T PROMISCUOUS MUTANT OF THE ECORI RESTRICTION ENDONUCLEASE BOUND TO ITS COGNATE RECOGNITION SITE.
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Protein domain: Restriction endonuclease EcoRI (7)
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Escherichia coli [TaxId: 562] (7)
1CKQA:PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX
1CL8A:A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)
1ERIA:X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE
1QC9A:; B:; C:THE CRYSTALLOGRAPHIC STRUCTURE OF RESTRICTION ENDONUCLEASE ECO RI AT 3.3 A IN THE ABSENSE OF DNA
1QPSA:THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION
1QRHA:X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A
1QRIA:X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A
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Family: Restriction endonuclease EcoRV (30)
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Protein domain: Restriction endonuclease EcoRV (30)
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Escherichia coli [TaxId: 562] (30)
1AZ0A:; B:ECORV ENDONUCLEASE/DNA COMPLEX
1AZ3A:; B:ECORV ENDONUCLEASE, UNLIGANDED, FORM B
1AZ4A:; B:ECORV ENDONUCLEASE, UNLIGANDED, FORM B, T93A MUTANT
1B94A:; B:RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM
1B95A:; B:ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP
1B96A:; B:ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP
1B97A:; B:ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP
1BGBA:; B:ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA
1BSSA:; B:ECORV-T93A/DNA/CA2+
1BSUA:; B:STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
1BUAA:; B:STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
1EO3A:; B:INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY
1EO4A:; B:ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE
1EONA:; B:ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+
1EOOA:; B:ECORV BOUND TO COGNATE DNA
1EOPA:; B:ECORV BOUND TO COGNATE DNA
1RV5A:; B:COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT)
1RVAA:; B:MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION
1RVBA:; B:MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION
1RVCA:; B:MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION
1RVEA:; B:THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA FRAGMENTS
1STXA:; B:STRUCTURE OF THE K38A MUTANT OF ECORV BOUND TO COGNATE DNA AND MN2+
1SUZA:; B:THE STRUCTURE OF K92A ECORV BOUND TO COGNATE DNA AND MG2+
1SX5A:; B:K38A ECORV BOUND TO CLEAVED DNA AND MN2+: P1 CRYSTAL FORM
1SX8A:; B:ECORV BOUND TO COGNATE DNA AND MN2+
2B0DA:; B:ECORV RESTRICTION ENDONUCLEASE/GAATTC/CA2+
2B0EA:; B:ECORV RESTRICTION ENDONUCLEASE/GAAUTC/CA2+
2GE5A:; B:ECORV RESTRICTION ENDONUCLEASE C-TERMINAL DELETION MUTANT/GATATC/CA2+
2RVEA:; B:THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS
4RVEA:; B:; C:THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS
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Family: Restriction endonuclease FokI, C-terminal (catalytic) domain (2)
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Protein domain: Restriction endonuclease FokI, C-terminal (catalytic) domain (2)
(-)
Flavobacterium okeanokoites [TaxId: 244] (2)
1FOKA:387-579STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA
2FOKA:387-579; B:387-579STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI
(-)
Family: Restriction endonuclease HincII (19)
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Protein domain: Restriction endonuclease HincII (19)
(-)
Haemophilus influenzae [TaxId: 727] (19)
1KC6A:; B:; C:; D:HINCII BOUND TO COGNATE DNA
1TW8A:; B:; C:; D:HINCII BOUND TO CA2+ AND COGNATE DNA GTCGAC
1TX3A:; B:; C:; D:HINCII BOUND TO COGNATE DNA
1XHUA:; B:; C:; D:HINCII BOUND TO CLEAVED, COGNATE DNA CONTAINING GTCGAC
1XHVA:; B:; C:; D:HINCII BOUND TO CLEAVED COGNATE DNA GTCGAC AND MN2+
2AUDA:UNLIGANDED HINCII
2GIEA:; B:; C:; D:HINCII BOUND TO COGNATE DNA GTTAAC
2GIGA:; B:ALTERATION OF SEQUENCE SPECIFICITY OF THE TYPE II RESTRICTION ENDONUCLEASE HINCII THROUGH AN INDIRECT READOUT MECHANISM
2GIHA:; B:Q138F HINCII BOUND TO COGNATE DNA GTCGAC AND CA2+
2GIIA:; B:Q138F HINCII BOUND TO COGNATE DNA GTTAAC
2GIJA:; B:Q138F HINCII BOUND TO COGNATE DNA GTTAAC AND CA2+
3E3YA:; B:Q138F HINCII BOUND TO GTTAAC AND COCRYSTALLIZED WITH 5 MM CA2+
3E40A:; B:Q138F HINCII BOUND TO GTTAAC AND COCRYSTALLIZED WITH 5 MM CA2+
3E41A:; B:Q138F HINCII BOUND TO GTCGAC AND 5 MM CA2+
3E42A:; B:Q138F HINCII BOUND TO GTCGAC AND CA2+ (COCRYSTALLIZED)
3E43A:; B:Q138F HINCII BOUND TO GTTAAC AND COCRYSTALLIZED WITH 2.5 MM MGCL2
3E44A:; B:Q138F HINCII BOUND TO CLEAVED DNA (GTT | AAC) AND MN2+
3E45A:; B:Q138F HINCII BOUND TO NONCOGNATE DNA (GTGCAC) AND CA2+
3EBCA:; B:STRUCTURE OF N141A HINCII WITH COGNATE DNA
(-)
Family: Restriction endonuclease MspI (2)
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Protein domain: Restriction endonuclease MspI (2)
(-)
Moraxella sp. [TaxId: 479] (2)
1SA3A:; B:AN ASYMMETRIC COMPLEX OF RESTRICTION ENDONUCLEASE MSPI ON ITS PALINDROMIC DNA RECOGNITION SITE
1YFIA:; B:CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE MSPI IN COMPLEX WITH ITS COGNATE DNA IN P212121 SPACE GROUP
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Family: Restriction endonuclease MunI (1)
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Protein domain: Restriction endonuclease MunI (1)
(-)
Mycoplasma, unidentified species [TaxId: 2093] (1)
1D02A:; B:CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA
(-)
Family: Restriction endonuclease NaeI (2)
(-)
Protein domain: Restriction endonuclease NaeI (2)
(-)
Nocardia aerocolonigenes [TaxId: 68170] (2)
1EV7A:; B:CRYSTAL STRUCTURE OF DNA RESTRICTION ENDONUCLEASE NAEI
1IAWA:; B:CRYSTAL STRUCTURE OF NAEI COMPLEXED WITH 17MER DNA
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Family: Restriction endonuclease NgoIV (1)
(-)
Protein domain: Restriction endonuclease NgoIV (1)
(-)
Neisseria gonorrhoeae [TaxId: 485] (1)
1FIUA:; B:; C:; D:TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA
(-)
Family: Restriction endonuclease PvuII (10)
(-)
Protein domain: automated matches (1)
(-)
Proteus vulgaris [TaxId: 585] (1)
3KSKA:2-159; A:160-319; B:2-159; B:160-318CRYSTAL STRUCTURE OF SINGLE CHAIN PVUII
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Protein domain: Restriction endonuclease PvuII (9)
(-)
Proteus vulgaris [TaxId: 585] (9)
1EYUA:; B:HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6
1F0OA:; B:PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE
1H56A:; B:STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NEW MAGNESIUM ION BINDING SITE NEAR TYR94 IN THE RESTRICTION ENDONUCLEASE PVUII
1K0ZA:; B:CRYSTAL STRUCTURE OF THE PVUII ENDONUCLEASE WITH PR3+ AND SO4 IONS BOUND IN THE ACTIVE SITE AT 2.05A.
1NI0A:; B:; C:STRUCTURE OF THE Y94F MUTANT OF THE RESTRICTION ENDONUCLEASE PVUII
1PVIA:; B:STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA
1PVUA:; B:THE CRYSTAL STRUCTURE OF PVUII ENDONUCLEASE REVEALS EXTENSIVE STRUCTURAL HOMOLOGIES TO ECORV
2PVIA:; B:PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA
3PVIA:; B:D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS
(-)
Family: TnsA endonuclease, N-terminal domain (2)
(-)
Protein domain: TnsA endonuclease, N-terminal domain (2)
(-)
Escherichia coli [TaxId: 562] (2)
1F1ZA:8-168; B:8-168TNSA, A CATALYTIC COMPONENT OF THE TN7 TRANSPOSITION SYSTEM
1T0FA:7-168; B:7-168CRYSTAL STRUCTURE OF THE TNSA/TNSC(504-555) COMPLEX
(-)
Family: Type II restriction endonuclease catalytic domain (1)
(-)
Protein domain: Restriction endonuclease EcoRII, C-terminal domain (1)
(-)
Escherichia coli [TaxId: 562] (1)
1NA6A:179-398; B:183-402CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE ECORII MUTANT R88A
(-)
Family: Very short patch repair (VSR) endonuclease (3)
(-)
Protein domain: Very short patch repair (VSR) endonuclease (3)
(-)
Escherichia coli [TaxId: 562] (3)
1CW0A:CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DNA
1ODGA:VERY-SHORT-PATCH DNA REPAIR ENDONUCLEASE BOUND TO ITS REACTION PRODUCT SITE
1VSRA:VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI
(-)
Family: XisH-like (2)
(-)
Protein domain: FdxN element excision controlling factor protein (2)
(-)
Anabaena variabilis [TaxId: 1172] (1)
2OKFA:4-139; B:CRYSTAL STRUCTURE OF A FDXN ELEMENT EXCISION CONTROLLING FACTOR PROTEIN (AVA_3312) FROM ANABAENA VARIABILIS AT 1.60 A RESOLUTION
(-)
Nostoc punctiforme [TaxId: 272131] (1)
2INBA:5-139CRYSTAL STRUCTURE OF AN XISH FAMILY PROTEIN (ZP_00107633.1) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 A RESOLUTION
(-)
Family: XPF/Rad1/Mus81 nuclease (9)
(-)
Protein domain: DNA excision repair protein ERCC-1 (3)
(-)
Human (Homo sapiens) [TaxId: 9606] (3)
2A1IA:99-227CRYSTAL STRUCTURE OF THE CENTRAL DOMAIN OF HUMAN ERCC1
2JNWA:99-214SOLUTION STRUCTURE OF A ERCC1-XPA HETERODIMER
2JPDA:SOLUTION STRUCTURE OF THE ERCC1 CENTRAL DOMAIN
(-)
Protein domain: Putative ATP-dependent RNA helicase Hef, nuclease domain (4)
(-)
Pyrococcus furiosus [TaxId: 2261] (4)
1J22A:CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, SELENOMET DERIVATIVE
1J23A:CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN
1J24A:CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, CA COCRYSTAL
1J25A:CRYSTAL STRUCTURE OF ARCHAEAL XPF/MUS81 HOMOLOG, HEF FROM PYROCOCCUS FURIOSUS, NUCLEASE DOMAIN, MN COCRYSTAL
(-)
Protein domain: XPF endonuclease (2)
(-)
Aeropyrum pernix [TaxId: 56636] (2)
2BGWA:16-148; B:18-148XPF FROM AEROPYRUM PERNIX, COMPLEX WITH DNA
2BHNA:19-148; B:19-148; C:20-147; D:19-148XPF FROM AEROPYRUM PERNIX
(-)
Family: YaeQ-like (2)
(-)
Protein domain: Hypothetical protein PSPTO1487 (1)
(-)
Pseudomonas syringae pv. tomato [TaxId: 323] (1)
2OT9A:2-180CRYSTAL STRUCTURE OF YAEQ PROTEIN FROM PSEUDOMONAS SYRINGAE
(-)
Protein domain: Hypothetical protein XAC2396 (1)
(-)
Xanthomonas axonopodis pv. citri [TaxId: 92829] (1)
2G3WA:4-182; B:THE CRYSTAL STRUCTURE OF YAEQ PROTEIN FROM XANTHOMONAS AXONOPODIS PV. CITRI