1AZO - JenaLib

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:26 , VAL A:138 , GLY A:139 , HOH A:562 , EDO A:602	BINDING SITE FOR RESIDUE EDO A 601
02	AC2	SOFTWARE	VAL A:83 , GLU A:126 , GLY A:139 , HOH A:316 , HOH A:483 , HOH A:496 , EDO A:601	BINDING SITE FOR RESIDUE EDO A 602
03	AC3	SOFTWARE	GLU A:14 , SER A:85 , LEU A:86 , HOH A:326 , HOH A:456	BINDING SITE FOR RESIDUE EDO A 603
04	AC4	SOFTWARE	SER A:85 , ARG A:88 , GLU A:128 , HOH A:357 , HOH A:501 , EDO A:608	BINDING SITE FOR RESIDUE EDO A 604
05	AC5	SOFTWARE	GLU A:14 , ARG A:119 , HOH A:507	BINDING SITE FOR RESIDUE EDO A 605
06	AC6	SOFTWARE	LYS A:79 , THR A:80 , PHE A:94	BINDING SITE FOR RESIDUE EDO A 606
07	AC7	SOFTWARE	PRO A:99 , ASN A:103 , VAL A:106 , SER A:111 , HIS A:112 , VAL A:113 , TRP A:158	BINDING SITE FOR RESIDUE EDO A 607
08	AC8	SOFTWARE	LEU A:86 , ARG A:88 , LEU A:142 , LEU A:143 , HIS A:225 , ILE A:228 , HOH A:302 , EDO A:604	BINDING SITE FOR RESIDUE EDO A 608
09	AC9	SOFTWARE	ALA A:34 , GLY A:37 , THR A:110 , ARG A:203 , HOH A:492	BINDING SITE FOR RESIDUE EDO A 609
10	BC1	SOFTWARE	GLY A:105 , VAL A:106 , THR A:110 , ILE A:204 , LEU A:205 , HOH A:520	BINDING SITE FOR RESIDUE EDO A 610
11	BC2	SOFTWARE	GLN A:22 , SER A:25 , SER A:140 , PRO A:141 , HOH A:379 , HOH A:469	BINDING SITE FOR RESIDUE EDO A 611

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (5, 5)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:214
 aligned with MUTH_ECOLI | P06722 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223      
           MUTH_ECOLI     4 PRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENLKRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFTSALLARHFLIQ 229
               SCOP domains d1azoa_ A: DNA mismatch repair protein MutH from                                                                                                                                                                                   SCOP domains
               CATH domains 1azoA00 A:4-229  [code=3.40.600.10, no name defined]                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhh....hhhhhhhh.............hhhhhhhhh...-----..hhhh....eeeeeee.........eeeee..............hhhhh...eeeeeee......hhh.....eeee...hhhhhhhhhhhhhhhhhhh...hhh........eeee.-------.eeee.....eeee...eeee.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------S-C--------------------------------------------------------------------------K-----------------R-C-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1azo A   4 PRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENLKRDKGWIGVLLEIWLGA-----PEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRVLWIPVEGEASIPLAQRRVGSPLLWSPNEEEDRQLREDWEELmDmIVLGQVERITARHGEYLQIRP-------LTEAIGARGERILTLPRGFYLKKNFTSALLARHFLIQ 229
                                    13        23        33        43        53       | -   |    73        83        93       103       113       123       133       143       153       163|      173       183 |     193       203       213       223      
                                                                                    61    67                                                                                            162-MSE                185     193                                    
                                                                                                                                                                                          164-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (MUTH_ECOLI | P06722)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0043765	T/G mismatch-specific endonuclease activity	Catalysis of the repair of T/G mismatches arising from deamination of 5-methylcytosine in DNA by nicking double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the mismatched thymidine residue. The incision is mismatch-dependent and strand-specific, in favor of the G-containing strand. The incision serves as a starting point for subsequent excision repair by DNA polymerase I, which excises thymidine and reinserts cytidine.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006304	DNA modification	The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0006298	mismatch repair	A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
	GO:0000018	regulation of DNA recombination	Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0032300	mismatch repair complex	Any complex formed of proteins that act in mismatch repair.

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 13)

Sites (11, 11)