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Description

Title :   CRYSTAL STRUCTURE OF AN XISH FAMILY PROTEIN (ZP_00107633.1) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   06 Oct 06 (Deposition) - 24 Oct 06 (Release) - 24 Sep 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Zp_00107633. 1, Hypothetical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Structural Genomics-Unknown Function Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. C. Hwang, J. W. Golden, J. Pascual, D. Xu, A. Cheltsov, A. Godzik
Site-Specific Recombination Of Nitrogen-Fixation Genes In Cyanobacteria By Xisf-Xish-Xisi Complex: Structures And Models.
Proteins 2014
PubMed-ID: 25179344 | Reference-DOI: 10.1002/PROT.24679

Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ZP_00107633.1
	Organism Scientific	:	NOSTOC PUNCTIFORME
	Organism Taxid	:	63737
	Strain	:	PCC 73102

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 5)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:101 , THR A:102 , VAL A:129 , HOH A:167 , HOH A:238	BINDING SITE FOR RESIDUE CL A 140
2	AC2	SOFTWARE	LYS A:17 , ARG A:87 , VAL A:94 , LEU A:95 , GLN A:131 , VAL A:133 , HOH A:146 , HOH A:168 , HOH A:170 , HOH A:176	BINDING SITE FOR RESIDUE GOL A 141
3	AC3	SOFTWARE	TRP A:20 , ARG A:50 , GLU A:53 , TRP A:137 , HOH A:234	BINDING SITE FOR RESIDUE GOL A 142

SS Bonds (0, 0)

(no "SS Bond" information available for 2INB)

Cis Peptide Bonds (1, 1)

Asymmetric Unit

No.	Residues
1	Asp A:25	-	Pro A:26

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 2INB)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 2INB)

Exons (0, 0)

(no "Exon" information available for 2INB)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d2inba1 A:5-139 FdxN element excision controlling factor protein                                                                 SCOP domains
               CATH domains 2inbA00 A:5-139  [code=3.40.1350.10, no name defined]                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..eeee.....ee..ee...eeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhhhhhhh...eeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2inb A   5 DVFHQVVKIALEKDGWQITNDPLTISVGGVNLKLIAAEREGEKIAVEVKSFLERSSAISEFHTALGQFINYRGALRRRQPERVLYLAVPLTTYKTFFQLDFPKEmIAENQVKmLIYDVEQEVIFQWIN 139
                                    14        24        34 ||     51        61        71        81        91       101       111    |  121  |    131        
                                                          36|                                                                     116-MSE 124-MSE           
                                                           44

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Restriction endonuclease-like (209)

Superfamily: Restriction endonuclease-like (170)

Family: XisH-like (2)

Protein domain: FdxN element excision controlling factor protein (2)

Nostoc punctiforme [TaxId: 272131] (1)

d2inba1

A:5-139

CATH Domains (1, 1)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Trna Endonuclease; Chain: A, domain 1 (24)

Homologous Superfamily: [code=3.40.1350.10, no name defined] (24)

Nostoc punctiforme pcc 73102. Organism_taxid: 63737. Strain: pcc 73102. (1)

2inbA00

A:5-139

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 2INB)

Gene Ontology (0, 0)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2INB)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

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Exons (0, 0)

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