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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE BSE634I WITH COGNATE DNA
 
Authors :  E. N. Manakova, S. Grazulis, D. Golovenko, G. Tamulaitiene
Date :  11 Dec 11  (Deposition) - 25 Apr 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,R,S,V,X,Y,Z
Biol. Unit 1:  A,B,E,F,I,J,M,N  (1x)
Biol. Unit 2:  C,D,G,H,K,L,O,P  (1x)
Biol. Unit 3:  V,Z  (1x)
Biol. Unit 4:  X,Y  (1x)
Keywords :  Restriction Endonuclease, Protein-Dna Complex, Hydrolase, Dna Binding Protein, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Manakova, S. Grazulis, M. Zaremba, G. Tamulaitiene, D. Golovenko, V. Siksnys
Structural Mechanisms Of The Degenerate Sequence Recognitio By Bse634I Restriction Endonuclease.
Nucleic Acids Res. V. 40 6741 2012
PubMed-ID: 22495930  |  Reference-DOI: 10.1093/NAR/GKS300

(-) Compounds

Molecule 1 - ENDONUCLEASE BSE634IR
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.1.21.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC18
    Expression System Strain: ER2267
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BSE634IR
    Mutation: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Strain: 1422
 
Molecule 2 - DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3')
    Chains: I, J, K, L, M, N, O, P, R, S, V, X, Y, Z
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122
Asymmetric Unit : ABCDEFGHIJKLMNOPRSVXYZ
Biological Unit 1 (1x): AB  EF  IJ  MN        
Biological Unit 2 (1x):   CD  GH  KL  OP      
Biological Unit 3 (1x):                   V  Z
Biological Unit 4 (1x):                    XY 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3V21)

(-) Sites  (0, 0)

(no "Site" information available for 3V21)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V21)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3V21)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V21)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V21)

(-) Exons   (0, 0)

(no "Exon" information available for 3V21)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         
         Q8RT53_GEOSE     4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21a_ A: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..eeeee....eeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 A   4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         


Chain B from PDB  Type:PROTEIN  Length:289
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         
         Q8RT53_GEOSE     4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21b_ B: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..eeeee....eeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 B   4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         


Chain C from PDB  Type:PROTEIN  Length:288
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:288
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284        
         Q8RT53_GEOSE     5 LTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21c_ C: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee....eeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3v21 C   5 LTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284        


Chain D from PDB  Type:PROTEIN  Length:289
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         
         Q8RT53_GEOSE     4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21d_ D: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..eeeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 D   4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         


Chain E from PDB  Type:PROTEIN  Length:289
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         
         Q8RT53_GEOSE     4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21e_ E: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh....eeee..eeee....hhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhh...............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh....................eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 E   4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         


Chain F from PDB  Type:PROTEIN  Length:287
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:287
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       
         Q8RT53_GEOSE     6 TNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21f_ F: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhh.........hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh....................eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 F   6 TNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       


Chain G from PDB  Type:PROTEIN  Length:289
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         
         Q8RT53_GEOSE     4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21g_ G: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..eeeee....eeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 G   4 NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283         


Chain H from PDB  Type:PROTEIN  Length:290
 aligned with Q8RT53_GEOSE | Q8RT53 from UniProtKB/TrEMBL  Length:293

    Alignment length:290
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292
         Q8RT53_GEOSE     3 TNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTLHFRKIFDNETREKLHQLEKTLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
               SCOP domains d3v21h_ H: Restriction endonuclease Bse634I                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee....eeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhhh.............eeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhh...hhhhh............eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v21 H   3 TNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK 292
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292


Chain I from PDB  Type:DNA  Length:13
                                             
                 3v21 I   1 TTCGACCGGTCGA  13
                                    10   


Chain J from PDB  Type:DNA  Length:13
                                             
                 3v21 J   1 TTCGACCGGTCGA  13
                                    10   


Chain K from PDB  Type:DNA  Length:13
                                             
                 3v21 K   1 TTCGACCGGTCGA  13
                                    10   


Chain L from PDB  Type:DNA  Length:12
                                            
                 3v21 L   2 TCGACCGGTCGA  13
                                    11  


Chain M from PDB  Type:DNA  Length:12
                                            
                 3v21 M   2 TCGACCGGTCGA  13
                                    11  


Chain N from PDB  Type:DNA  Length:12
                                            
                 3v21 N   2 TCGACCGGTCGA  13
                                    11  


Chain O from PDB  Type:DNA  Length:13
                                             
                 3v21 O   1 TTCGACCGGTCGA  13
                                    10   


Chain P from PDB  Type:DNA  Length:12
                                            
                 3v21 P   2 TCGACCGGTCGA  13
                                    11  


Chain R from PDB  Type:DNA  Length:12
                                            
                 3v21 R   2 TCGACCGGTCGA  13
                                    11  


Chain S from PDB  Type:DNA  Length:13
                                             
                 3v21 S   1 TTCGACCGGTCGA  13
                                    10   


Chain V from PDB  Type:DNA  Length:13
                                             
                 3v21 V   1 TTCGACCGGTCGA  13
                                    10   


Chain X from PDB  Type:DNA  Length:13
                                             
                 3v21 X   1 TTCGACCGGTCGA  13
                                    10   


Chain Y from PDB  Type:DNA  Length:13
                                             
                 3v21 Y   1 TTCGACCGGTCGA  13
                                    10   


Chain Z from PDB  Type:DNA  Length:12
                                            
                 3v21 Z   2 TCGACCGGTCGA  13
                                    11
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V21)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V21)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q8RT53_GEOSE | Q8RT53)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0009036    Type II site-specific deoxyribonuclease activity    Catalysis of the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates and 3' hydroxyls. Cleavage is dependent on the presence in the DNA of a specific recognition site; cleavage occurs at or very near this recognition site.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
biological process
    GO:0009307    DNA restriction-modification system    A defense process found in many bacteria and archaea that protects the organism from invading foreign DNA by cleaving it with a restriction endonuclease. The organism's own DNA is protected by methylation of a specific nucleotide, which occurs immediately following replication, in the same target site as the restriction enzyme.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8RT53_GEOSE | Q8RT53: 1knv 3v1z 3v20

(-) Related Entries Specified in the PDB File

3v1z THE SAME PROTEIN WITH THE OTHER COGNATE DNA
3v20 THE SAME PROTEIN WITH THE OTHER COGNATE DNA