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(-) Description

Title :  CRYSTAL STRUCTURE OF TT1808 FROM THERMUS THERMOPHILUS HB8
 
Authors :  M. Idaka, T. Wada, K. Murayama, T. Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  17 May 04  (Deposition) - 17 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Idaka, T. Wada, K. Murayama, T. Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Crystal Structure Of Tt1808 From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TT1808
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WDJ)

(-) Sites  (0, 0)

(no "Site" information available for 1WDJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WDJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:173 -Pro A:174
2Asp B:173 -Pro B:174
3Asp C:173 -Pro C:174

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WDJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WDJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1WDJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:186
 aligned with Q5SI60_THET8 | Q5SI60 from UniProtKB/TrEMBL  Length:187

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
         Q5SI60_THET8     2 PLVLDLARPVSEEELRRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
               SCOP domains d1wdja_ A: Hypothetical protein TT1808 (TTHA1514)                                                                                                                                          SCOP domains
               CATH domains 1wdjA00 A:2-187 tt1808, chain A                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee......hhhhhhhhhhhh..eeeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeee.....ee.....ee...eeeeehhhhhh.hhhhhhh.......eeeee.....hhhhhhhhhhhhhhh...eeeeee....eeeee......eeee...eee........eee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wdj A   2 PLVLDLARPVSEEELRRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q5SI60_THET8 | Q5SI60 from UniProtKB/TrEMBL  Length:187

    Alignment length:152
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  
         Q5SI60_THET8    36 LWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
               SCOP domains d1wdjb_ B: Hypothetical protein TT1808 (TTHA1514)                                                                                                        SCOP domains
               CATH domains 1wdjB00 B:36-187 tt1808, chain A                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh.eeeee....ee.....ee...eeeeehhhhhh.hhhhhhh.......eeeee.....hhhhhhhhhhhhhhh...eeeeee....eeeee......eeee...eee........eee.hhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdj B  36 LWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  


Chain C from PDB  Type:PROTEIN  Length:186
 aligned with Q5SI60_THET8 | Q5SI60 from UniProtKB/TrEMBL  Length:187

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
         Q5SI60_THET8     2 PLVLDLARPVSEEELRRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
               SCOP domains d1wdjc_ C: Hypothetical protein TT1808 (TTHA1514)                                                                                                                                          SCOP domains
               CATH domains 1wdjC00 C:2-187 tt1808, chain A                                                                                                                                                            CATH domains
           Pfam domains (1) -------------------------------------------Uma2-1wdjC01 C:45-156                                                                                           ------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------Uma2-1wdjC02 C:45-156                                                                                           ------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------Uma2-1wdjC03 C:45-156                                                                                           ------------------------------- Pfam domains (3)
         Sec.struct. author .eee......hhhhhhhhhhhh..eeeee.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee....ee.....ee...eeeeehhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhh...eeeeee....eeeee......eeee...eee........eee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wdj C   2 PLVLDLARPVSEEELRRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLEGVERVSLDPELPGFALSLPPLW 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: PDDEXK (13)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Asp A:173 - Pro A:174   [ RasMol ]  
    Asp B:173 - Pro B:174   [ RasMol ]  
    Asp C:173 - Pro C:174   [ RasMol ]  
 

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