PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5DOW
Biol. Unit 3
Info
Asym.Unit (293 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (73 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SOLUTION OF THE VARIABLY-TWINNED STRUCTURE OF A NOVEL CALMODULIN-PEPTIDE COMPLEX IN A NOVEL CONFIGURATION
Authors
:
J. P. Keller
Date
:
11 Sep 15 (Deposition) - 10 Aug 16 (Release) - 18 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Calmodulin-Peptide Complex, Calcium Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Keller
Solution Of The Structure Of A Calmodulin-Peptide Complex I A Novel Configuration From A Variably Twinned Data Set.
Acta Crystallogr D Struct V. 73 22 2017 Biol
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
4a: AMINO GROUP (NH2a)
4b: AMINO GROUP (NH2b)
4c: AMINO GROUP (NH2c)
4d: AMINO GROUP (NH2d)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
NH2
1
Mod. Amino Acid
AMINO GROUP
5
SO4
-1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AD7 (SOFTWARE)
02: AD9 (SOFTWARE)
03: AE1 (SOFTWARE)
04: AE2 (SOFTWARE)
05: AE3 (SOFTWARE)
06: AE4 (SOFTWARE)
07: AE5 (SOFTWARE)
08: AE6 (SOFTWARE)
09: AE7 (SOFTWARE)
10: AE8 (SOFTWARE)
11: AE9 (SOFTWARE)
12: AF5 (SOFTWARE)
13: AF6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD7
SOFTWARE
GLU C:83 , HOH E:350
binding site for residue NA C 209
02
AD9
SOFTWARE
ASP E:57 , ASP E:59 , ASN E:61 , THR E:63 , GLU E:68 , HOH E:354
binding site for residue CA E 201
03
AE1
SOFTWARE
ASP E:21 , ASP E:23 , ASP E:25 , THR E:27 , GLU E:32 , HOH E:402
binding site for residue CA E 202
04
AE2
SOFTWARE
ASP E:94 , ASP E:96 , ASN E:98 , TYR E:100 , GLU E:105 , HOH E:491
binding site for residue CA E 203
05
AE3
SOFTWARE
ASP E:130 , ASP E:132 , ASP E:134 , GLN E:136 , GLU E:141 , HOH E:349
binding site for residue CA E 204
06
AE4
SOFTWARE
PRO A:67 , GLU A:68 , THR A:71 , LYS E:14 , HOH E:512 , HOH E:566
binding site for residue CL E 205
07
AE5
SOFTWARE
LYS E:95 , HOH E:342
binding site for residue CL E 206
08
AE6
SOFTWARE
THR E:6 , GLU E:7 , HOH E:388 , HOH E:476
binding site for residue CL E 207
09
AE7
SOFTWARE
GLN F:575 , GLY F:578 , ILE F:580 , GLN F:581
binding site for residue CL F 601
10
AE8
SOFTWARE
ILE E:86 , ARG F:572 , GLN F:575
binding site for residue CL F 602
11
AE9
SOFTWARE
HOH E:570 , THR G:35 , ARG G:38 , HOH G:370 , HOH G:380 , HOH G:409
binding site for residue SO4 G 201
12
AF5
SOFTWARE
ARG E:91 , ARG G:87
binding site for residue CL G 206
13
AF6
SOFTWARE
ARG E:107 , ASP G:79
binding site for residue NA G 207
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (293 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (76 KB)
Header - Biol.Unit 3
Biol.Unit 4 (73 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5DOW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help