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(-) Description

Title :  CRYO-EM MODEL OF B41 SOSIP.664 IN COMPLEX WITH SOLUBLE CD4 (D1-D2) AND FRAGMENT ANTIGEN BINDING VARIABLE DOMAIN OF 17B
 
Authors :  G. Ozorowski, J. Pallesen, A. B. Ward
Date :  28 Apr 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Keywords :  Viral Fusion, Hiv-1, Envelope Glycoprotein, Cd4 Receptor Binding, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Ozorowski, J. Pallesen, N. De Val, D. Lyumkis, C. A. Cottrell, J. L. Torres, J. Copps, R. L. Stanfield, A. Cupo, P. Pugach, J. P. Moore, I. A. Wilson, A. B. Ward
Open And Closed Structures Reveal Allostery And Pliability In The Hiv-1 Envelope Spike
Nature 2017
PubMed: search  |  Reference-DOI: 10.1038/NATURE23010

(-) Compounds

Molecule 1 - 17B FAB LIGHT CHAIN
    Chains: L, N, O
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - ENVELOPE GLYCOPROTEIN GP160
    Chains: A, B, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 3 - ENVELOPE GLYCOPROTEIN GP160
    Chains: G, I, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Variant: 9032-08.A1.4685
 
Molecule 4 - T-CELL SURFACE GLYCOPROTEIN CD4
    Chains: C, E, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Gene: CD4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: T-CELL SURFACE ANTIGEN T4/LEU-3
 
Molecule 5 - 17B FAB HEAVY CHAIN
    Chains: H, K, M
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric/Biological Unit : ABCDEFGHIJKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 129)

Asymmetric/Biological Unit (3, 129)
No.NameCountTypeFull Name
1BMA21Ligand/IonBETA-D-MANNOSE
2MAN18Ligand/IonALPHA-D-MANNOSE
3NAG90Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (57, 57)

Asymmetric Unit (57, 57)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:611 , SER A:613binding site for Mono-Saccharide NAG A 701 bound to ASN A 611
02AC2SOFTWAREASN A:616binding site for Mono-Saccharide NAG A 702 bound to ASN A 616
03AC3SOFTWAREASN A:625binding site for Mono-Saccharide NAG A 703 bound to ASN A 625
04AC4SOFTWAREASN A:637binding site for Mono-Saccharide NAG A 704 bound to ASN A 637
05AC5SOFTWAREASN B:611 , SER B:613binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
06AC6SOFTWAREASN B:616binding site for Mono-Saccharide NAG B 702 bound to ASN B 616
07AC7SOFTWAREASN B:625binding site for Mono-Saccharide NAG B 703 bound to ASN B 625
08AC8SOFTWAREASP B:636 , ASN B:637binding site for Mono-Saccharide NAG B 704 bound to ASN B 637
09AC9SOFTWAREASN D:611 , SER D:613binding site for Mono-Saccharide NAG D 701 bound to ASN D 611
10AD1SOFTWAREASN D:616binding site for Mono-Saccharide NAG D 702 bound to ASN D 616
11AD2SOFTWAREASP D:624 , ASN D:625binding site for Mono-Saccharide NAG D 703 bound to ASN D 625
12AD3SOFTWAREASP D:636 , ASN D:637binding site for Mono-Saccharide NAG D 704 bound to ASN D 637
13AD4SOFTWARESER A:528 , ASN G:88binding site for Mono-Saccharide NAG G 601 bound to ASN G 88
14AD5SOFTWAREASN G:234binding site for Poly-Saccharide residues NAG G 602 through NAG G 603 bound to ASN G 234
15AD6SOFTWAREASN G:229 , ASN G:241binding site for Poly-Saccharide residues NAG G 604 through BMA G 606 bound to ASN G 241
16AD7SOFTWARESER G:209 , VAL G:254 , LEU G:259 , LEU G:260 , ASN G:262 , GLY G:263 , CYS G:378 , GLY G:379 , ILE G:439 , GLY G:441 , GLN G:442 , ARG G:444 , SER G:446 , SER G:447 , ASN G:448 , THR G:450binding site for Poly-Saccharide residues LEU G 261 through MAN G 613 bound to ASN G 262
17AD8SOFTWARELYS C:29 , GLN C:33 , ASN G:276 , ILE G:277 , THR G:278 , ASN G:280 , ALA G:281binding site for Poly-Saccharide residues ASP G 279 through MAN G 617 bound to ASN G 276
18AD9SOFTWAREGLU G:293 , ASN G:295 , ASN G:332 , SER G:334 , ARG G:444 , NAG G:632 , NAG G:633binding site for Poly-Saccharide residues NAG G 618 through NAG G 619 bound to ASN G 295
19AE1SOFTWAREASN G:332 , ASN G:413 , THR G:415 , NAG G:632binding site for Poly-Saccharide residues NAG G 620 through NAG G 621 bound to ASN G 332
20AE2SOFTWARESER G:334 , LYS G:335 , ARG G:337 , ASN G:339 , ARG G:400binding site for Poly-Saccharide residues ALA G 336 through NAG G 622 bound to ASN G 339
21AE3SOFTWAREPRO G:354 , ASN G:355binding site for Mono-Saccharide NAG G 623 bound to ASN G 355
22AE4SOFTWAREASN G:362 , ARG G:469binding site for Poly-Saccharide residues NAG G 624 through MAN G 627 bound to ASN G 362
23AE5SOFTWAREASN G:386 , THR G:388binding site for Poly-Saccharide residues NAG G 628 through BMA G 630 bound to ASN G 386
24AE6SOFTWAREASN G:392 , ASP G:403binding site for Poly-Saccharide residues NAG G 637 through BMA G 639 bound to ASN G 392
25AE7SOFTWAREASN G:397 , ASN G:398binding site for Mono-Saccharide NAG G 631 bound to ASN G 397
26AE8SOFTWAREASN G:413 , ARG G:444 , NAG G:618 , NAG G:620 , NAG G:621binding site for Poly-Saccharide residues NAG G 632 through BMA G 634 bound to ASN G 413
27AE9SOFTWAREASN G:262 , GLU G:293 , ASN G:448binding site for Poly-Saccharide residues NAG G 635 through NAG G 636 bound to ASN G 448
28AF1SOFTWARESER B:528 , ASN I:88binding site for Mono-Saccharide NAG I 601 bound to ASN I 88
29AF2SOFTWAREASN I:234 , SER I:236binding site for Poly-Saccharide residues NAG I 602 through NAG I 603 bound to ASN I 234
30AF3SOFTWAREASN I:229 , ASN I:241binding site for Poly-Saccharide residues NAG I 604 through BMA I 606 bound to ASN I 241
31AF4SOFTWARESER I:209 , PRO I:212 , LEU I:261 , ASN I:262 , ASN I:377 , CYS I:378 , ILE I:439 , GLY I:441 , GLN I:442 , ARG I:444 , SER I:446 , NAG I:635binding site for Poly-Saccharide residues NAG I 607 through MAN I 613 bound to ASN I 262
32AF5SOFTWARELYS E:29 , ASN I:276 , ILE I:277 , THR I:278 , ASN I:280 , ALA I:281binding site for Poly-Saccharide residues ASP I 279 through MAN I 617 bound to ASN I 276
33AF6SOFTWAREGLU I:293 , ASN I:295 , SER I:334 , ARG I:444 , NAG I:632 , NAG I:633binding site for Poly-Saccharide residues NAG I 618 through NAG I 619 bound to ASN I 295
34AF7SOFTWAREASN I:332 , ASN I:413 , THR I:415 , NAG I:632binding site for Poly-Saccharide residues NAG I 620 through NAG I 621 bound to ASN I 332
35AF8SOFTWARESER I:334 , LYS I:335 , ARG I:337 , ASN I:339 , ARG I:400binding site for Poly-Saccharide residues ALA I 336 through NAG I 622 bound to ASN I 339
36AF9SOFTWAREPRO I:354 , ASN I:355binding site for Mono-Saccharide NAG I 623 bound to ASN I 355
37AG1SOFTWAREASN I:362 , ARG I:469binding site for Poly-Saccharide residues NAG I 624 through MAN I 627 bound to ASN I 362
38AG2SOFTWAREASN I:386 , THR I:388binding site for Poly-Saccharide residues NAG I 628 through BMA I 630 bound to ASN I 386
39AG3SOFTWAREPRO I:389 , ASN I:392 , ASP I:403binding site for Poly-Saccharide residues NAG I 637 through BMA I 639 bound to ASN I 392
40AG4SOFTWAREASN I:397 , ASN I:398binding site for Mono-Saccharide NAG I 631 bound to ASN I 397
41AG5SOFTWAREASN I:332 , ASN I:413 , ARG I:444 , NAG I:618 , NAG I:620 , NAG I:621binding site for Poly-Saccharide residues NAG I 632 through BMA I 634 bound to ASN I 413
42AG6SOFTWAREASN I:262 , GLU I:293 , ASN I:448 , NAG I:607binding site for Poly-Saccharide residues NAG I 635 through NAG I 636 bound to ASN I 448
43AG7SOFTWARESER D:528 , ASN J:88binding site for Mono-Saccharide NAG J 601 bound to ASN J 88
44AG8SOFTWAREASN J:234 , SER J:236binding site for Poly-Saccharide residues NAG J 602 through NAG J 603 bound to ASN J 234
45AG9SOFTWAREASN J:229 , ASN J:241binding site for Poly-Saccharide residues NAG J 604 through BMA J 606 bound to ASN J 241
46AH1SOFTWARESER J:209 , PRO J:212 , LEU J:261 , ASN J:262 , ASN J:377 , CYS J:378 , ILE J:439 , GLY J:441 , GLN J:442 , ARG J:444 , SER J:446 , NAG J:635binding site for Poly-Saccharide residues NAG J 607 through MAN J 613 bound to ASN J 262
47AH2SOFTWARELYS F:29 , ASN J:276 , ILE J:277 , THR J:278 , ASN J:280 , ALA J:281binding site for Poly-Saccharide residues ASP J 279 through MAN J 617 bound to ASN J 276
48AH3SOFTWAREGLU J:293 , ASN J:295 , ASN J:332 , SER J:334 , ARG J:444 , NAG J:632 , NAG J:633binding site for Poly-Saccharide residues NAG J 618 through NAG J 619 bound to ASN J 295
49AH4SOFTWAREASN J:332 , ASN J:413 , THR J:415 , NAG J:632binding site for Poly-Saccharide residues NAG J 620 through NAG J 621 bound to ASN J 332
50AH5SOFTWARESER J:334 , LYS J:335 , ARG J:337 , ASN J:339 , ARG J:400binding site for Poly-Saccharide residues ALA J 336 through NAG J 622 bound to ASN J 339
51AH6SOFTWAREPRO J:354 , ASN J:355binding site for Mono-Saccharide NAG J 623 bound to ASN J 355
52AH7SOFTWAREASN J:362 , ARG J:469binding site for Poly-Saccharide residues NAG J 624 through MAN J 627 bound to ASN J 362
53AH8SOFTWAREASN J:386 , THR J:388binding site for Poly-Saccharide residues NAG J 628 through BMA J 630 bound to ASN J 386
54AH9SOFTWAREASN J:392 , ASP J:403binding site for Poly-Saccharide residues NAG J 637 through BMA J 639 bound to ASN J 392
55AI1SOFTWAREASN J:397 , ASN J:398binding site for Mono-Saccharide NAG J 631 bound to ASN J 397
56AI2SOFTWAREASN J:413 , NAG J:618 , NAG J:620 , NAG J:621binding site for Poly-Saccharide residues NAG J 632 through BMA J 634 bound to ASN J 413
57AI3SOFTWAREASN J:262 , GLU J:293 , ASN J:448 , NAG J:607binding site for Poly-Saccharide residues NAG J 635 through NAG J 636 bound to ASN J 448

(-) SS Bonds  (42, 42)

Asymmetric/Biological Unit
No.Residues
1A:598 -A:604
2A:605 -G:501
3B:598 -B:604
4B:605 -I:501
5C:16 -C:84
6C:130 -C:159
7D:598 -D:604
8D:605 -J:501
9E:16 -E:84
10E:130 -E:159
11F:16 -F:84
12F:130 -F:159
13G:54 -G:74
14G:119 -G:205
15G:126 -G:196
16G:218 -G:247
17G:228 -G:239
18G:296 -G:331
19G:378 -G:445
20G:385 -G:418
21H:22 -H:92
22I:54 -I:74
23I:119 -I:205
24I:126 -I:196
25I:218 -I:247
26I:228 -I:239
27I:296 -I:331
28I:378 -I:445
29I:385 -I:418
30J:54 -J:74
31J:119 -J:205
32J:126 -J:196
33J:218 -J:247
34J:228 -J:239
35J:296 -J:331
36J:378 -J:445
37J:385 -J:418
38K:22 -K:92
39L:23 -L:88
40M:22 -M:92
41N:23 -N:88
42O:23 -O:88

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Trp L:94 -Pro L:95
2Trp N:94 -Pro N:95
3Trp O:94 -Pro O:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VN3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VN3)

(-) Exons   (0, 0)

(no "Exon" information available for 5VN3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 A  515 LGAFILGFLGAAGSTMGAASMALTVQARLLLSGIQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD  664
                                   524       534       544   ||  568       578       588       598       608       618       628       638       648       658      
                                                           548|                                                                                                     
                                                            563                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 B  515 LGAFILGFLGAAGSTMGAASMALTVQARLLLSGIQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD  664
                                   524       534       544   ||  568       578       588       598       608       618       628       638       648       658      
                                                           548|                                                                                                     
                                                            563                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee.............ee.........ee..ee..........ee.hhhhh......eee...hhhhh.eeee.......eeeeee.eeee.........eeeeeeee.......eee...............eeeee..........eeee..eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 C    1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      


Chain D from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 D  515 LGAFILGFLGAAGSTMGAASMALTVQARLLLSGIQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD  664
                                   524       534       544   ||  568       578       588       598       608       618       628       638       648       658      
                                                           548|                                                                                                     
                                                            563                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee.............ee.........ee..ee..........ee.hhhhh......eee...hhhhh.eeee.......eeeeee.eeee.........eeeeeeee.......eee...............eeeee..........eeee..eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 E    1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      


Chain F from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee.............ee.........ee..ee..........ee.hhhhh......eee...hhhhh.eeee.......eeeeee.eeee.........eeeeeeee.......eee...............eeeee..........eeee..eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 F    1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      


Chain G from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee.......ee.........hhhhhhhhhh..........ee..............hhhhhhhhhhhhhh..........................................ee.....eeee...............eee.........................eee..........eeeeeeeeeeeeee................eeee.hhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhhhh...............eee....eee......eee..........eeeeeeeeee..........eeee.....hhhhhhhh....eeee.eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 G   32 AKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHINIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV  505
                                    41        51        61        71        81        91       101       111       121       131|      202       212       222       232       242       252       262       272       282       292       302      |327       337       347       357 ||    368       378       388      |399    || 416       426       436       446       456       466       476       486       496         
                                                                                                                             131|                                                                                                                 309|                               359|                               395|    404|                                                                                             
                                                                                                                              193                                                                                                                  325                                361                                397     412                                                                                             


Chain H from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee....hhhhh.eeeeee.....eeeeeee......eee.........eee.....eeeeee........eeeeeee..................ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 H    1 QVQLLESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVT  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|||||  105       
                                                                              52A                            82A||               100A|||||100J|            
                                                                                                              82B|                100B|||||100K            
                                                                                                               82C                 100C||||||              
                                                                                                                                    100D|||||              
                                                                                                                                     100E||||              
                                                                                                                                      100F|||              
                                                                                                                                       100G||              
                                                                                                                                        100H|              
                                                                                                                                         100I              


Chain I from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee.......ee.........hhhhhhhhhh..........ee..............hhhhhhhhhhhhhh..........................................ee.....eeee...............eee.........................eee..........eeeeeeeeeeeeee................eeee.hhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhhhh...............eee....eee......eee..........eeeeeeeeee..........eeee.....hhhhhhhh....eeee.eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 I   32 AKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHINIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV  505
                                    41        51        61        71        81        91       101       111       121       131|      202       212       222       232       242       252       262       272       282       292       302      |327       337       347       357 ||    368       378       388      |399    || 416       426       436       446       456       466       476       486       496         
                                                                                                                             131|                                                                                                                 309|                               359|                               395|    404|                                                                                             
                                                                                                                              193                                                                                                                  325                                361                                397     412                                                                                             


Chain J from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee.......ee.........hhhhhhhhhh..........ee..............hhhhhhhhhhhhhh..........................................ee.....eeee...............eee.........................eee..........eeeeeeeeeeeeee................eeee.hhhhhhhhhhhhhhhhh......eeee......hhhhhheeeee..eeeee.hhhhhh...............eee....eee......eee..........eeeeeeeeee..........eeee.....hhhhhhhh....eeee.eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 J   32 AKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHINIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV  505
                                    41        51        61        71        81        91       101       111       121       131|      202       212       222       232       242       252       262       272       282       292       302      |327       337       347       357 ||    368       378       388      |399    || 416       426       436       446       456       466       476       486       496         
                                                                                                                             131|                                                                                                                 309|                               359|                               395|    404|                                                                                             
                                                                                                                              193                                                                                                                  325                                361                                397     412                                                                                             


Chain K from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee....hhhhh.eeeeee.....eeeeeee......eee.........eee.....eeeeee........eeeeeee..................ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 K    1 QVQLLESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVT  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|||||  105       
                                                                              52A                            82A||               100A|||||100J|            
                                                                                                              82B|                100B|||||100K            
                                                                                                               82C                 100C||||||              
                                                                                                                                    100D|||||              
                                                                                                                                     100E||||              
                                                                                                                                      100F|||              
                                                                                                                                       100G||              
                                                                                                                                        100H|              
                                                                                                                                         100I              


Chain L from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee............eeeeeeeeeee...eeeeee.......eeee...ee.......eeee..eeeeeeee.........eeeeee.................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 L    1 ELELTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKR  108
                                    10        20        30        40        50        60        70        80        90     || 98       108
                                                                                                                         95A|             
                                                                                                                          95B             


Chain M from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee....hhhhh.eeeeee.....eeeeeee......eee.........eee.....eeeeee........eeeeeee..................ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 M    1 QVQLLESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVT  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|||||  105       
                                                                              52A                            82A||               100A|||||100J|            
                                                                                                              82B|                100B|||||100K            
                                                                                                               82C                 100C||||||              
                                                                                                                                    100D|||||              
                                                                                                                                     100E||||              
                                                                                                                                      100F|||              
                                                                                                                                       100G||              
                                                                                                                                        100H|              
                                                                                                                                         100I              


Chain N from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee............eeeeeeeeeee...eeeeee.......eeee...ee.......eeee..eeeeeeee.........eeeeee.................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 N    1 ELELTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKR  108
                                    10        20        30        40        50        60        70        80        90     || 98       108
                                                                                                                         95A|             
                                                                                                                          95B             


Chain O from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee............eeeeeeeeeee...eeeeee.......eeee...ee.......eeee..eeeeeeee.........eeeeee.................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5vn3 O    1 ELELTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKR  108
                                    10        20        30        40        50        60        70        80        90     || 98       108
                                                                                                                         95A|             
                                                                                                                          95B
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        B3UES2_9HIV1 | B3UES2: 5vn8
        B3UEZ6_9HIV1 | B3UEZ6: 5vn8
        CD4_HUMAN | P01730: 1cdh 1cdi 1cdj 1cdu 1cdy 1g9m 1g9n 1gc1 1jl4 1opn 1opt 1opw 1q68 1rzj 1rzk 1wbr 1wio 1wip 1wiq 2b4c 2jkr 2jkt 2klu 2nxy 2nxz 2ny0 2ny1 2ny2 2ny3 2ny4 2ny5 2ny6 2qad 3b71 3cd4 3j70 3jcb 3jcc 3jwd 3jwo 3lqa 3o2d 3s4s 3s5l 3t0e 4h8w 4jm2 4p9h 4q6i 4r2g 4r4h 4rqs 5a7x 5a8h 5cay 5thr 5u1f

(-) Related Entries Specified in the PDB File

5vn8