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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH UMP
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date :  23 Jul 09  (Deposition) - 28 Jul 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Ump
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 113)

Asymmetric Unit (4, 113)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO496Ligand/IonSULFATE ION
3U5P7Ligand/IonURIDINE-5'-MONOPHOSPHATE
4ZN8Ligand/IonZINC ION
Biological Unit 1 (3, 36)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO432Ligand/IonSULFATE ION
3U5P3Ligand/IonURIDINE-5'-MONOPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 26)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO423Ligand/IonSULFATE ION
3U5P2Ligand/IonURIDINE-5'-MONOPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 26)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO425Ligand/IonSULFATE ION
3U5P1Ligand/IonURIDINE-5'-MONOPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (2, 17)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO416Ligand/IonSULFATE ION
3U5P1Ligand/IonURIDINE-5'-MONOPHOSPHATE
4ZN-1Ligand/IonZINC ION

(-) Sites  (111, 111)

Asymmetric Unit (111, 111)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREARG A:424 , ARG C:73 , HOH C:493BINDING SITE FOR RESIDUE SO4 A 432
002AC2SOFTWAREGLU A:153BINDING SITE FOR RESIDUE SO4 A 433
003AC3SOFTWARELYS A:99 , ARG A:256BINDING SITE FOR RESIDUE SO4 A 434
004AC4SOFTWAREGLU A:199 , ARG A:202 , SER D:330BINDING SITE FOR RESIDUE SO4 A 435
005AC5SOFTWAREARG A:198 , ARG A:202 , HOH A:520BINDING SITE FOR RESIDUE SO4 A 436
006AC6SOFTWARETHR A:222 , PHE A:223 , ALA A:224 , SER A:313 , GLY A:314BINDING SITE FOR RESIDUE SO4 A 437
007AC7SOFTWAREPRO A:304 , ARG A:333BINDING SITE FOR RESIDUE SO4 A 438
008AC8SOFTWAREPRO A:243 , ARG A:244BINDING SITE FOR RESIDUE SO4 A 439
009AC9SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , HOH A:489 , ARG D:84BINDING SITE FOR RESIDUE SO4 A 440
010BC1SOFTWAREARG A:24 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 441
011BC2SOFTWAREPHE A:47 , ASP A:48 , PRO A:49 , FLC A:464BINDING SITE FOR RESIDUE SO4 A 442
012BC3SOFTWAREARG A:359 , GLY A:362 , HOH A:523 , ARG C:359BINDING SITE FOR RESIDUE SO4 A 443
013BC4SOFTWAREARG A:359 , ARG C:359 , GLU C:364BINDING SITE FOR RESIDUE SO4 A 444
014BC5SOFTWAREARG A:73 , HOH A:561 , ARG C:424BINDING SITE FOR RESIDUE SO4 A 445
015BC6SOFTWAREGLN A:383 , LEU A:412BINDING SITE FOR RESIDUE SO4 A 446
016BC7SOFTWAREHIS A:293 , ARG B:284BINDING SITE FOR RESIDUE SO4 A 447
017BC8SOFTWAREGLN A:34 , LEU A:62 , ASP A:63BINDING SITE FOR RESIDUE SO4 A 448
018BC9SOFTWAREGLY A:319BINDING SITE FOR RESIDUE SO4 A 449
019CC1SOFTWAREARG A:354BINDING SITE FOR RESIDUE SO4 A 450
020CC2SOFTWAREARG A:354 , ALA A:369 , SER A:370 , VAL A:371 , HOH A:524 , GLY D:362 , SO4 D:442BINDING SITE FOR RESIDUE SO4 A 451
021CC3SOFTWAREPRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 452
022CC4SOFTWARELYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 453
023CC5SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 454
024CC6SOFTWAREHIS A:293 , THR A:294 , ARG A:320BINDING SITE FOR RESIDUE SO4 A 455
025CC7SOFTWAREMET A:1 , ARG A:2 , GLU A:153BINDING SITE FOR RESIDUE SO4 A 456
026CC8SOFTWAREARG A:192 , HOH A:587BINDING SITE FOR RESIDUE SO4 A 457
027CC9SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 458
028DC1SOFTWAREARG A:77 , GLU A:113 , HIS A:117BINDING SITE FOR RESIDUE SO4 A 459
029DC2SOFTWAREASN A:281 , HOH A:553BINDING SITE FOR RESIDUE SO4 A 460
030DC3SOFTWAREARG A:24BINDING SITE FOR RESIDUE SO4 A 461
031DC4SOFTWAREARG A:192 , TYR A:341 , LYS A:405 , U5P A:465BINDING SITE FOR RESIDUE SO4 A 463
032DC5SOFTWAREGLY A:46 , SO4 A:442 , PRO C:44 , PHE C:45 , GLY C:46 , PHE C:47 , ASP C:48 , PRO C:49 , GLU C:74BINDING SITE FOR RESIDUE FLC A 464
033DC6SOFTWAREVAL A:12 , THR A:188 , TYR A:189 , ARG A:192 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379 , HIS A:380 , GLU A:402 , LYS A:405 , SO4 A:463 , HOH A:472BINDING SITE FOR RESIDUE U5P A 465
034DC7SOFTWAREARG A:2 , VAL A:4 , PHE A:6 , LEU A:20 , ARG A:25 , GLY A:46 , PHE A:47 , GLY A:426 , GLY A:428BINDING SITE FOR RESIDUE U5P A 466
035DC8SOFTWARELEU A:88 , GLU A:91 , ARG A:263 , HOH A:579 , LEU D:277BINDING SITE FOR RESIDUE U5P A 467
036DC9SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:469BINDING SITE FOR RESIDUE ZN A 468
037EC1SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:468 , HOH A:472BINDING SITE FOR RESIDUE ZN A 469
038EC2SOFTWAREPHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:550BINDING SITE FOR RESIDUE SO4 B 432
039EC3SOFTWARELYS B:298 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327 , HOH B:473BINDING SITE FOR RESIDUE SO4 B 433
040EC4SOFTWAREARG B:192 , PRO B:193 , HIS B:194 , ARG B:195 , GLY B:375BINDING SITE FOR RESIDUE SO4 B 434
041EC5SOFTWAREPRO B:304BINDING SITE FOR RESIDUE SO4 B 435
042EC6SOFTWARETYR A:248 , GLU A:289 , ALA A:296 , HOH A:502 , HOH A:525 , TYR B:248 , GLU B:289 , VAL B:291 , ALA B:296 , HOH B:491 , HOH B:518BINDING SITE FOR RESIDUE SO4 B 436
043EC7SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 437
044EC8SOFTWARETYR B:236 , HOH B:526BINDING SITE FOR RESIDUE SO4 B 438
045EC9SOFTWAREGLY B:319 , SO4 B:453BINDING SITE FOR RESIDUE SO4 B 439
046FC1SOFTWARELEU B:387 , LEU B:412 , ARG B:416 , HOH B:517 , HOH B:520BINDING SITE FOR RESIDUE SO4 B 440
047FC2SOFTWAREARG B:359 , GLY B:362BINDING SITE FOR RESIDUE SO4 B 441
048FC3SOFTWAREARG B:84 , ARG B:263 , HOH B:549BINDING SITE FOR RESIDUE SO4 B 442
049FC4SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 443
050FC5SOFTWAREGLU B:292 , HIS B:293 , THR B:294 , SO4 B:449 , HOH B:521BINDING SITE FOR RESIDUE SO4 B 444
051FC6SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270 , HOH B:487BINDING SITE FOR RESIDUE SO4 B 445
052FC7SOFTWAREARG B:354 , SER B:370 , VAL B:371 , HOH B:541BINDING SITE FOR RESIDUE SO4 B 446
053FC8SOFTWAREVAL B:371 , HIS B:372 , THR B:373BINDING SITE FOR RESIDUE SO4 B 447
054FC9SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 448
055GC1SOFTWAREARG B:320 , SO4 B:444BINDING SITE FOR RESIDUE SO4 B 449
056GC2SOFTWAREARG B:424BINDING SITE FOR RESIDUE SO4 B 451
057GC3SOFTWAREMET B:1 , ARG B:2 , LEU B:20BINDING SITE FOR RESIDUE SO4 B 452
058GC4SOFTWAREHIS B:323 , SO4 B:439 , HOH B:515BINDING SITE FOR RESIDUE SO4 B 453
059GC5SOFTWAREPRO B:262 , ASN B:281 , ARG B:284BINDING SITE FOR RESIDUE SO4 B 454
060GC6SOFTWARELEU A:407 , LYS A:411 , HOH A:582 , LEU B:407 , LYS B:411BINDING SITE FOR RESIDUE FLC B 455
061GC7SOFTWAREVAL B:12 , THR B:188 , TYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , HIS B:380 , HIS B:400 , GLU B:402 , LYS B:405 , HOH B:462 , HOH B:500BINDING SITE FOR RESIDUE U5P B 456
062GC8SOFTWAREARG B:2 , LEU B:20 , ARG B:25 , GLY B:46 , PHE B:47 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE U5P B 457
063GC9SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , HOH B:462BINDING SITE FOR RESIDUE ZN B 458
064HC1SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , HOH B:462BINDING SITE FOR RESIDUE ZN B 459
065HC2SOFTWAREARG A:73 , ARG C:424BINDING SITE FOR RESIDUE SO4 C 432
066HC3SOFTWAREVAL C:290 , GLU C:292 , HIS C:293BINDING SITE FOR RESIDUE SO4 C 433
067HC4SOFTWAREARG C:24 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 434
068HC5SOFTWARETHR C:222 , PHE C:223 , ALA C:224 , SER C:313 , GLY C:314BINDING SITE FOR RESIDUE SO4 C 435
069HC6SOFTWAREHOH C:477BINDING SITE FOR RESIDUE SO4 C 436
070HC7SOFTWAREARG C:302BINDING SITE FOR RESIDUE SO4 C 437
071HC8SOFTWAREMET C:1 , ARG C:2BINDING SITE FOR RESIDUE SO4 C 438
072HC9SOFTWAREARG C:24 , LYS C:50BINDING SITE FOR RESIDUE SO4 C 439
073IC1SOFTWAREARG C:25 , PHE C:47 , ASP C:48BINDING SITE FOR RESIDUE SO4 C 440
074IC2SOFTWAREARG C:84BINDING SITE FOR RESIDUE SO4 C 441
075IC3SOFTWAREARG A:359 , ARG C:359 , GLY C:362BINDING SITE FOR RESIDUE SO4 C 442
076IC4SOFTWAREGLY C:426 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 443
077IC5SOFTWAREARG C:155BINDING SITE FOR RESIDUE SO4 C 444
078IC6SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 445
079IC7SOFTWAREARG C:368BINDING SITE FOR RESIDUE SO4 C 446
080IC8SOFTWAREGLN C:344 , GLY C:345BINDING SITE FOR RESIDUE SO4 C 447
081IC9SOFTWAREARG C:77 , HIS C:117BINDING SITE FOR RESIDUE SO4 C 448
082JC1SOFTWAREHIS C:240BINDING SITE FOR RESIDUE SO4 C 449
083JC2SOFTWAREARG C:2 , ARG C:25 , HOH C:492BINDING SITE FOR RESIDUE SO4 C 450
084JC3SOFTWAREARG C:84 , LEU C:88 , ARG C:263 , HOH C:462BINDING SITE FOR RESIDUE SO4 C 451
085JC4SOFTWARELYS C:411BINDING SITE FOR RESIDUE SO4 C 452
086JC5SOFTWARELYS C:298 , HIS C:323 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 453
087JC6SOFTWARESER C:330 , PRO C:366 , ARG C:368BINDING SITE FOR RESIDUE SO4 C 454
088JC7SOFTWAREARG C:10 , ARG C:424 , HOH C:499BINDING SITE FOR RESIDUE SO4 C 455
089JC8SOFTWAREHIS C:327 , LYS D:411BINDING SITE FOR RESIDUE SO4 C 456
090JC9SOFTWAREVAL C:12 , THR C:188 , TYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , HIS C:380 , HIS C:400 , GLU C:402 , LYS C:405 , HOH C:479BINDING SITE FOR RESIDUE U5P C 457
091KC1SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:459BINDING SITE FOR RESIDUE ZN C 458
092KC2SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:458 , HOH C:479BINDING SITE FOR RESIDUE ZN C 459
093KC3SOFTWAREARG D:192 , PRO D:193 , HIS D:194 , ARG D:195 , GLY D:375BINDING SITE FOR RESIDUE SO4 D 432
094KC4SOFTWARETYR D:236BINDING SITE FOR RESIDUE SO4 D 433
095KC5SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 434
096KC6SOFTWAREPRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 435
097KC7SOFTWAREGLY D:426 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 436
098KC8SOFTWAREARG D:119 , PRO D:120BINDING SITE FOR RESIDUE SO4 D 437
099KC9SOFTWAREARG D:155BINDING SITE FOR RESIDUE SO4 D 438
100LC1SOFTWAREARG D:77 , HIS D:117BINDING SITE FOR RESIDUE SO4 D 439
101LC2SOFTWAREARG D:263BINDING SITE FOR RESIDUE SO4 D 440
102LC3SOFTWAREARG A:195 , LYS D:298 , ASN D:301 , HIS D:323 , HIS D:327 , HOH D:464BINDING SITE FOR RESIDUE SO4 D 441
103LC4SOFTWARESER A:370 , HIS A:372 , SO4 A:451 , GLY D:362BINDING SITE FOR RESIDUE SO4 D 442
104LC5SOFTWARELYS D:99BINDING SITE FOR RESIDUE SO4 D 443
105LC6SOFTWAREARG D:24 , LEU D:129 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 444
106LC7SOFTWARETHR D:222 , PHE D:223 , ALA D:224 , MET D:253 , GLY D:314BINDING SITE FOR RESIDUE SO4 D 445
107LC8SOFTWAREVAL D:290 , GLU D:292BINDING SITE FOR RESIDUE SO4 D 446
108LC9SOFTWAREARG D:354BINDING SITE FOR RESIDUE SO4 D 447
109MC1SOFTWAREVAL D:12 , THR D:188 , TYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379 , HIS D:380 , HIS D:400 , GLU D:402 , LYS D:405 , HOH D:452 , HOH D:462BINDING SITE FOR RESIDUE U5P D 448
110MC2SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , ZN D:450 , HOH D:452BINDING SITE FOR RESIDUE ZN D 449
111MC3SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , ZN D:449 , HOH D:452BINDING SITE FOR RESIDUE ZN D 450

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IEL)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IEL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IEL)

(-) Exons   (0, 0)

(no "Exon" information available for 3IEL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3iela_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iel A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ielb_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.eee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iel B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ielc_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhh.........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee..hhhhhhhh.......eeee........hhhhhhhhhh.....eeee.......hhhhhhhh...eee....eee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhh...eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iel C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ield_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhh..eee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee...hhhhhhhhhhh...eeeee.........................ee.......hhhhhhhh...eee....eee.....ee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iel D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IEL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IEL)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  RNSE_THET8 | Q5SLP1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3idz 3ie0 3ie1 3ie2 3iek 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONINE DERIVATIVE
3a4y H61A MUTANT
3idz S378Q MUTANT
3ie0 S378Y MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3ie2 H400V MUTANT
3iek NATIVE
3iem COMPLEXED WITH RNA ANALOG