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(-) Description

Title :  CRYSTAL STRUCTURE OF S378Q MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  22 Jul 09  (Deposition) - 04 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of S378Q Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 77)

Asymmetric Unit (3, 77)
No.NameCountTypeFull Name
1FLC3Ligand/IonCITRATE ANION
2SO466Ligand/IonSULFATE ION
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 23)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO422Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 25)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO423Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 15)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO415Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO46Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (76, 76)

Asymmetric Unit (76, 76)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESO4 A:451BINDING SITE FOR RESIDUE SO4 A 432
02AC2SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270BINDING SITE FOR RESIDUE SO4 A 433
03AC3SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 434
04AC4SOFTWARETYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , GLN A:378 , GLY A:379BINDING SITE FOR RESIDUE SO4 A 435
05AC5SOFTWAREHIS A:61 , PHE A:223 , VAL A:225 , GLU A:226 , ARG A:227BINDING SITE FOR RESIDUE SO4 A 436
06AC6SOFTWARELYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 437
07AC7SOFTWAREARG A:73 , ARG C:424BINDING SITE FOR RESIDUE SO4 A 438
08AC8SOFTWAREGLY A:318 , GLY A:319 , HOH A:459BINDING SITE FOR RESIDUE SO4 A 439
09AC9SOFTWAREARG A:24BINDING SITE FOR RESIDUE SO4 A 440
10BC1SOFTWAREARG A:354BINDING SITE FOR RESIDUE SO4 A 441
11BC2SOFTWAREPRO A:243 , ARG A:244 , ARG B:302BINDING SITE FOR RESIDUE SO4 A 442
12BC3SOFTWAREMET A:1 , ARG A:2BINDING SITE FOR RESIDUE SO4 A 443
13BC4SOFTWAREARG A:24 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 444
14BC5SOFTWAREASP A:250 , SER A:251 , PRO A:252 , ALA A:311 , GLY A:312 , GLY A:319 , ARG A:320 , HOH A:489BINDING SITE FOR RESIDUE SO4 A 445
15BC6SOFTWAREARG A:25 , PHE A:47 , ASP A:48BINDING SITE FOR RESIDUE SO4 A 446
16BC7SOFTWARELYS A:99 , PRO A:252 , ARG A:256BINDING SITE FOR RESIDUE SO4 A 447
17BC8SOFTWAREARG A:2 , GLY A:426 , GLY A:428BINDING SITE FOR RESIDUE SO4 A 448
18BC9SOFTWAREPRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 449
19CC1SOFTWARETHR A:222 , PHE A:223 , ALA A:224 , SER A:313 , GLY A:314BINDING SITE FOR RESIDUE SO4 A 450
20CC2SOFTWAREARG A:84 , LEU A:88 , SO4 A:432 , HOH A:483 , GLU D:270BINDING SITE FOR RESIDUE SO4 A 451
21CC3SOFTWAREPRO A:304 , ARG A:333BINDING SITE FOR RESIDUE SO4 A 452
22CC4SOFTWAREHIS A:293 , HOH A:464BINDING SITE FOR RESIDUE SO4 A 453
23CC5SOFTWAREGLY A:279 , LYS A:280 , ASN A:281 , ARG A:284 , HOH A:504 , HIS B:293BINDING SITE FOR RESIDUE FLC A 454
24CC6SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:456BINDING SITE FOR RESIDUE ZN A 455
25CC7SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:455BINDING SITE FOR RESIDUE ZN A 456
26CC8SOFTWAREARG B:24BINDING SITE FOR RESIDUE SO4 B 432
27CC9SOFTWAREARG B:84 , ARG B:263 , HOH B:460BINDING SITE FOR RESIDUE SO4 B 433
28DC1SOFTWARELYS B:210BINDING SITE FOR RESIDUE SO4 B 434
29DC2SOFTWAREARG B:354BINDING SITE FOR RESIDUE SO4 B 435
30DC3SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 436
31DC4SOFTWARETYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , GLY B:379 , HIS B:380BINDING SITE FOR RESIDUE SO4 B 437
32DC5SOFTWAREARG A:244 , LYS B:298 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327 , LEU B:361BINDING SITE FOR RESIDUE SO4 B 438
33DC6SOFTWARELEU B:387BINDING SITE FOR RESIDUE SO4 B 439
34DC7SOFTWARETHR B:222 , PHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:493BINDING SITE FOR RESIDUE SO4 B 440
35DC8SOFTWAREARG B:77 , ARG D:244BINDING SITE FOR RESIDUE SO4 B 441
36DC9SOFTWAREGLY B:318 , GLY B:319 , SO4 B:443 , FLC B:455BINDING SITE FOR RESIDUE SO4 B 442
37EC1SOFTWAREHIS B:323 , SO4 B:442BINDING SITE FOR RESIDUE SO4 B 443
38EC2SOFTWARELYS A:280 , ARG B:359 , GLY B:362BINDING SITE FOR RESIDUE SO4 B 444
39EC3SOFTWAREARG B:166BINDING SITE FOR RESIDUE SO4 B 445
40EC4SOFTWAREARG B:2 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE SO4 B 446
41EC5SOFTWAREARG B:284 , VAL B:290BINDING SITE FOR RESIDUE SO4 B 447
42EC6SOFTWARELYS B:99 , PRO B:252 , ARG B:256BINDING SITE FOR RESIDUE SO4 B 448
43EC7SOFTWARELYS B:217 , ASN B:301 , ARG B:302 , ALA B:303 , PRO B:304BINDING SITE FOR RESIDUE SO4 B 449
44EC8SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 450
45EC9SOFTWAREARG B:25 , PHE B:47 , ASP B:48BINDING SITE FOR RESIDUE SO4 B 451
46FC1SOFTWAREGLU B:292 , HIS B:293 , THR B:294 , ARG B:320 , FLC B:455BINDING SITE FOR RESIDUE SO4 B 452
47FC2SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 453
48FC3SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 454
49FC4SOFTWAREGLY B:312 , GLY B:319 , ARG B:320 , SO4 B:442 , SO4 B:452BINDING SITE FOR RESIDUE FLC B 455
50FC5SOFTWARELEU A:407 , LYS A:411 , LEU B:407 , LYS B:411 , ALA B:414BINDING SITE FOR RESIDUE FLC B 456
51FC6SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:458BINDING SITE FOR RESIDUE ZN B 457
52FC7SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:457BINDING SITE FOR RESIDUE ZN B 458
53FC8SOFTWAREARG C:24 , LYS C:50BINDING SITE FOR RESIDUE SO4 C 432
54FC9SOFTWAREARG C:25 , PHE C:47 , ASP C:48BINDING SITE FOR RESIDUE SO4 C 433
55GC1SOFTWAREARG C:155BINDING SITE FOR RESIDUE SO4 C 434
56GC2SOFTWAREPHE C:223 , ALA C:224 , SER C:313 , GLY C:314 , MET C:315BINDING SITE FOR RESIDUE SO4 C 435
57GC3SOFTWAREARG C:25BINDING SITE FOR RESIDUE SO4 C 436
58GC4SOFTWAREARG C:2 , PRO C:430BINDING SITE FOR RESIDUE SO4 C 438
59GC5SOFTWARELYS C:99 , PRO C:252 , MET C:253 , ARG C:256BINDING SITE FOR RESIDUE SO4 C 439
60GC6SOFTWARELYS C:298 , ASN C:301 , HIS C:323 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 440
61GC7SOFTWAREARG C:24 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 441
62GC8SOFTWAREARG C:84 , LEU C:88 , ARG C:263BINDING SITE FOR RESIDUE SO4 C 442
63GC9SOFTWARETYR C:189 , ARG C:227 , TYR C:341 , GLY C:379 , HIS C:380BINDING SITE FOR RESIDUE SO4 C 443
64HC1SOFTWAREARG C:2 , GLY C:426 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 444
65HC2SOFTWAREMET C:1 , ARG C:2BINDING SITE FOR RESIDUE SO4 C 445
66HC3SOFTWAREPRO C:172 , ASP C:173 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 446
67HC4SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400BINDING SITE FOR RESIDUE ZN C 447
68HC5SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , HIS C:380BINDING SITE FOR RESIDUE ZN C 448
69HC6SOFTWARETYR D:189 , ARG D:227 , GLY D:340 , GLY D:379BINDING SITE FOR RESIDUE SO4 D 432
70HC7SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 433
71HC8SOFTWAREARG D:24 , ARG D:128 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 434
72HC9SOFTWAREMET D:1 , ARG D:2BINDING SITE FOR RESIDUE SO4 D 435
73IC1SOFTWAREPRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 436
74IC2SOFTWAREARG D:2 , LYS D:50 , GLY D:426 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 437
75IC3SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , ZN D:439BINDING SITE FOR RESIDUE ZN D 438
76IC4SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , ZN D:438BINDING SITE FOR RESIDUE ZN D 439

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IDZ)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IDZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IDZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3IDZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3idza_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhh...........eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eee....eee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3idz A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFQGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3idzb_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee......hhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhhh..eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3idz B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFQGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3idzc_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhhh.......eeeee.........hhhhhhhhh.....eeee.......hhhhhhh....eee....eee...eeee........hhhhhhhhh....eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3idz C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFQGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3idzd_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhh.....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eee...........hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh...........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eee..hhhhhhhhhh....eeee.........hhhhhhh.......eeee.......hhhhhhhhh..eee....eee...eeee........hhhhhhhhh....eeee...hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3idz D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFQGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IDZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IDZ)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  RNSE_THET8 | Q5SLP1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3ie0 3ie1 3ie2 3iek 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONINE DERIVATIVE
3a4y H61A MUTANT
3ie0 S378Y MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3ie2 H400V MUTANT
3iek NATIVE
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG RELATED ID: TTK003001672.4 RELATED DB: TARGETDB