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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 WITH UMP
Keywords METALLO BETA LACTAMASE FOLD, ENDONUCLEASE, HYDROLASE, METAL- NUCLEASE, RNA-BINDING, RRNA PROCESSING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3IEL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBONUCLEASE TTHA0252  A 431 3326 0
2  Protein   RIBONUCLEASE TTHA0252  B 431 3326 0
3  Protein   RIBONUCLEASE TTHA0252  C 431 3326 0
4  Protein   RIBONUCLEASE TTHA0252  D 431 3326 0
5  Ligand   RIBONUCLEASE TTHA0252  A 38 0 238
6  Ligand   RIBONUCLEASE TTHA0252  B 28 0 172
7  Ligand   RIBONUCLEASE TTHA0252  C 28 0 148
8  Ligand   RIBONUCLEASE TTHA0252  D 19 0 103
9 Water     286 0 286
total       2123 13304 947
Proteins
Unit 1 MET1 ARG2 ILE3 VAL4 PRO5 PHE6 GLY7 ALA8 ALA9 ARG10 GLU11 VAL12 THR13 GLY14 SER15 ALA16 HIS17 LEU18 LEU19 LEU20 ALA21 GLY22 GLY23 ARG24 ARG25 VAL26 LEU27 LEU28 ASP29 CYS30 GLY31 MET32 PHE33 GLN34 GLY35 LYS36 GLU37 GLU38 ALA39 ARG40 ASN41 HIS42 ALA43 PRO44 PHE45 GLY46 PHE47 ASP48 PRO49 LYS50 GLU51 VAL52 ASP53 ALA54 VAL55 LEU56 LEU57 THR58 HIS59 ALA60 HIS61 LEU62 ASP63 HIS64 VAL65 GLY66 ARG67 LEU68 PRO69 LYS70 LEU71 PHE72 ARG73 GLU74 GLY75 TYR76 ARG77 GLY78 PRO79 VAL80 TYR81 ALA82 THR83 ARG84 ALA85 THR86 VAL87 LEU88 LEU89 MET90 GLU91 ILE92 VAL93 LEU94 GLU95 ASP96 ALA97 LEU98 LYS99 VAL100 MET101 ASP102 GLU103 PRO104 PHE105 PHE106 GLY107 PRO108 GLU109 ASP110 VAL111 GLU112 GLU113 ALA114 LEU115 GLY116 HIS117 LEU118 ARG119 PRO120 LEU121 GLU122 TYR123 GLY124 GLU125 TRP126 LEU127 ARG128 LEU129 GLY130 ALA131 LEU132 SER133 LEU134 ALA135 PHE136 GLY137 GLN138 ALA139 GLY140 HIS141 LEU142 PRO143 GLY144 SER145 ALA146 PHE147 VAL148 VAL149 ALA150 GLN151 GLY152 GLU153 GLY154 ARG155 THR156 LEU157 VAL158 TYR159 SER160 GLY161 ASP162 LEU163 GLY164 ASN165 ARG166 GLU167 LYS168 ASP169 VAL170 LEU171 PRO172 ASP173 PRO174 SER175 LEU176 PRO177 PRO178 LEU179 ALA180 ASP181 LEU182 VAL183 LEU184 ALA185 GLU186 GLY187 THR188 TYR189 GLY190 ASP191 ARG192 PRO193 HIS194 ARG195 PRO196 TYR197 ARG198 GLU199 THR200 VAL201 ARG202 GLU203 PHE204 LEU205 GLU206 ILE207 LEU208 GLU209 LYS210 THR211 LEU212 SER213 GLN214 GLY215 GLY216 LYS217 VAL218 LEU219 ILE220 PRO221 THR222 PHE223 ALA224 VAL225 GLU226 ARG227 ALA228 GLN229 GLU230 ILE231 LEU232 TYR233 VAL234 LEU235 TYR236 THR237 HIS238 GLY239 HIS240 ARG241 LEU242 PRO243 ARG244 ALA245 PRO246 ILE247 TYR248 LEU249 ASP250 SER251 PRO252 MET253 ALA254 GLY255 ARG256 VAL257 LEU258 SER259 LEU260 TYR261 PRO262 ARG263 LEU264 VAL265 ARG266 TYR267 PHE268 SER269 GLU270 GLU271 VAL272 GLN273 ALA274 HIS275 PHE276 LEU277 GLN278 GLY279 LYS280 ASN281 PRO282 PHE283 ARG284 PRO285 ALA286 GLY287 LEU288 GLU289 VAL290 VAL291 GLU292 HIS293 THR294 GLU295 ALA296 SER297 LYS298 ALA299 LEU300 ASN301 ARG302 ALA303 PRO304 GLY305 PRO306 MET307 VAL308 VAL309 LEU310 ALA311 GLY312 SER313 GLY314 MET315 LEU316 ALA317 GLY318 GLY319 ARG320 ILE321 LEU322 HIS323 HIS324 LEU325 LYS326 HIS327 GLY328 LEU329 SER330 ASP331 PRO332 ARG333 ASN334 ALA335 LEU336 VAL337 PHE338 VAL339 GLY340 TYR341 GLN342 PRO343 GLN344 GLY345 GLY346 LEU347 GLY348 ALA349 GLU350 ILE351 ILE352 ALA353 ARG354 PRO355 PRO356 ALA357 VAL358 ARG359 ILE360 LEU361 GLY362 GLU363 GLU364 VAL365 PRO366 LEU367 ARG368 ALA369 SER370 VAL371 HIS372 THR373 LEU374 GLY375 GLY376 PHE377 SER378 GLY379 HIS380 ALA381 GLY382 GLN383 ASP384 GLU385 LEU386 LEU387 ASP388 TRP389 LEU390 GLN391 GLY392 GLU393 PRO394 ARG395 VAL396 VAL397 LEU398 VAL399 HIS400 GLY401 GLU402 GLU403 GLU404 LYS405 LEU406 LEU407 ALA408 LEU409 GLY410 LYS411 LEU412 LEU413 ALA414 LEU415 ARG416 GLY417 GLN418 GLU419 VAL420 SER421 LEU422 ALA423 ARG424 PHE425 GLY426 GLU427 GLY428 VAL429 PRO430 VAL431
Unit 2 MET1 ARG2 ILE3 VAL4 PRO5 PHE6 GLY7 ALA8 ALA9 ARG10 GLU11 VAL12 THR13 GLY14 SER15 ALA16 HIS17 LEU18 LEU19 LEU20 ALA21 GLY22 GLY23 ARG24 ARG25 VAL26 LEU27 LEU28 ASP29 CYS30 GLY31 MET32 PHE33 GLN34 GLY35 LYS36 GLU37 GLU38 ALA39 ARG40 ASN41 HIS42 ALA43 PRO44 PHE45 GLY46 PHE47 ASP48 PRO49 LYS50 GLU51 VAL52 ASP53 ALA54 VAL55 LEU56 LEU57 THR58 HIS59 ALA60 HIS61 LEU62 ASP63 HIS64 VAL65 GLY66 ARG67 LEU68 PRO69 LYS70 LEU71 PHE72 ARG73 GLU74 GLY75 TYR76 ARG77 GLY78 PRO79 VAL80 TYR81 ALA82 THR83 ARG84 ALA85 THR86 VAL87 LEU88 LEU89 MET90 GLU91 ILE92 VAL93 LEU94 GLU95 ASP96 ALA97 LEU98 LYS99 VAL100 MET101 ASP102 GLU103 PRO104 PHE105 PHE106 GLY107 PRO108 GLU109 ASP110 VAL111 GLU112 GLU113 ALA114 LEU115 GLY116 HIS117 LEU118 ARG119 PRO120 LEU121 GLU122 TYR123 GLY124 GLU125 TRP126 LEU127 ARG128 LEU129 GLY130 ALA131 LEU132 SER133 LEU134 ALA135 PHE136 GLY137 GLN138 ALA139 GLY140 HIS141 LEU142 PRO143 GLY144 SER145 ALA146 PHE147 VAL148 VAL149 ALA150 GLN151 GLY152 GLU153 GLY154 ARG155 THR156 LEU157 VAL158 TYR159 SER160 GLY161 ASP162 LEU163 GLY164 ASN165 ARG166 GLU167 LYS168 ASP169 VAL170 LEU171 PRO172 ASP173 PRO174 SER175 LEU176 PRO177 PRO178 LEU179 ALA180 ASP181 LEU182 VAL183 LEU184 ALA185 GLU186 GLY187 THR188 TYR189 GLY190 ASP191 ARG192 PRO193 HIS194 ARG195 PRO196 TYR197 ARG198 GLU199 THR200 VAL201 ARG202 GLU203 PHE204 LEU205 GLU206 ILE207 LEU208 GLU209 LYS210 THR211 LEU212 SER213 GLN214 GLY215 GLY216 LYS217 VAL218 LEU219 ILE220 PRO221 THR222 PHE223 ALA224 VAL225 GLU226 ARG227 ALA228 GLN229 GLU230 ILE231 LEU232 TYR233 VAL234 LEU235 TYR236 THR237 HIS238 GLY239 HIS240 ARG241 LEU242 PRO243 ARG244 ALA245 PRO246 ILE247 TYR248 LEU249 ASP250 SER251 PRO252 MET253 ALA254 GLY255 ARG256 VAL257 LEU258 SER259 LEU260 TYR261 PRO262 ARG263 LEU264 VAL265 ARG266 TYR267 PHE268 SER269 GLU270 GLU271 VAL272 GLN273 ALA274 HIS275 PHE276 LEU277 GLN278 GLY279 LYS280 ASN281 PRO282 PHE283 ARG284 PRO285 ALA286 GLY287 LEU288 GLU289 VAL290 VAL291 GLU292 HIS293 THR294 GLU295 ALA296 SER297 LYS298 ALA299 LEU300 ASN301 ARG302 ALA303 PRO304 GLY305 PRO306 MET307 VAL308 VAL309 LEU310 ALA311 GLY312 SER313 GLY314 MET315 LEU316 ALA317 GLY318 GLY319 ARG320 ILE321 LEU322 HIS323 HIS324 LEU325 LYS326 HIS327 GLY328 LEU329 SER330 ASP331 PRO332 ARG333 ASN334 ALA335 LEU336 VAL337 PHE338 VAL339 GLY340 TYR341 GLN342 PRO343 GLN344 GLY345 GLY346 LEU347 GLY348 ALA349 GLU350 ILE351 ILE352 ALA353 ARG354 PRO355 PRO356 ALA357 VAL358 ARG359 ILE360 LEU361 GLY362 GLU363 GLU364 VAL365 PRO366 LEU367 ARG368 ALA369 SER370 VAL371 HIS372 THR373 LEU374 GLY375 GLY376 PHE377 SER378 GLY379 HIS380 ALA381 GLY382 GLN383 ASP384 GLU385 LEU386 LEU387 ASP388 TRP389 LEU390 GLN391 GLY392 GLU393 PRO394 ARG395 VAL396 VAL397 LEU398 VAL399 HIS400 GLY401 GLU402 GLU403 GLU404 LYS405 LEU406 LEU407 ALA408 LEU409 GLY410 LYS411 LEU412 LEU413 ALA414 LEU415 ARG416 GLY417 GLN418 GLU419 VAL420 SER421 LEU422 ALA423 ARG424 PHE425 GLY426 GLU427 GLY428 VAL429 PRO430 VAL431
Unit 3 MET1 ARG2 ILE3 VAL4 PRO5 PHE6 GLY7 ALA8 ALA9 ARG10 GLU11 VAL12 THR13 GLY14 SER15 ALA16 HIS17 LEU18 LEU19 LEU20 ALA21 GLY22 GLY23 ARG24 ARG25 VAL26 LEU27 LEU28 ASP29 CYS30 GLY31 MET32 PHE33 GLN34 GLY35 LYS36 GLU37 GLU38 ALA39 ARG40 ASN41 HIS42 ALA43 PRO44 PHE45 GLY46 PHE47 ASP48 PRO49 LYS50 GLU51 VAL52 ASP53 ALA54 VAL55 LEU56 LEU57 THR58 HIS59 ALA60 HIS61 LEU62 ASP63 HIS64 VAL65 GLY66 ARG67 LEU68 PRO69 LYS70 LEU71 PHE72 ARG73 GLU74 GLY75 TYR76 ARG77 GLY78 PRO79 VAL80 TYR81 ALA82 THR83 ARG84 ALA85 THR86 VAL87 LEU88 LEU89 MET90 GLU91 ILE92 VAL93 LEU94 GLU95 ASP96 ALA97 LEU98 LYS99 VAL100 MET101 ASP102 GLU103 PRO104 PHE105 PHE106 GLY107 PRO108 GLU109 ASP110 VAL111 GLU112 GLU113 ALA114 LEU115 GLY116 HIS117 LEU118 ARG119 PRO120 LEU121 GLU122 TYR123 GLY124 GLU125 TRP126 LEU127 ARG128 LEU129 GLY130 ALA131 LEU132 SER133 LEU134 ALA135 PHE136 GLY137 GLN138 ALA139 GLY140 HIS141 LEU142 PRO143 GLY144 SER145 ALA146 PHE147 VAL148 VAL149 ALA150 GLN151 GLY152 GLU153 GLY154 ARG155 THR156 LEU157 VAL158 TYR159 SER160 GLY161 ASP162 LEU163 GLY164 ASN165 ARG166 GLU167 LYS168 ASP169 VAL170 LEU171 PRO172 ASP173 PRO174 SER175 LEU176 PRO177 PRO178 LEU179 ALA180 ASP181 LEU182 VAL183 LEU184 ALA185 GLU186 GLY187 THR188 TYR189 GLY190 ASP191 ARG192 PRO193 HIS194 ARG195 PRO196 TYR197 ARG198 GLU199 THR200 VAL201 ARG202 GLU203 PHE204 LEU205 GLU206 ILE207 LEU208 GLU209 LYS210 THR211 LEU212 SER213 GLN214 GLY215 GLY216 LYS217 VAL218 LEU219 ILE220 PRO221 THR222 PHE223 ALA224 VAL225 GLU226 ARG227 ALA228 GLN229 GLU230 ILE231 LEU232 TYR233 VAL234 LEU235 TYR236 THR237 HIS238 GLY239 HIS240 ARG241 LEU242 PRO243 ARG244 ALA245 PRO246 ILE247 TYR248 LEU249 ASP250 SER251 PRO252 MET253 ALA254 GLY255 ARG256 VAL257 LEU258 SER259 LEU260 TYR261 PRO262 ARG263 LEU264 VAL265 ARG266 TYR267 PHE268 SER269 GLU270 GLU271 VAL272 GLN273 ALA274 HIS275 PHE276 LEU277 GLN278 GLY279 LYS280 ASN281 PRO282 PHE283 ARG284 PRO285 ALA286 GLY287 LEU288 GLU289 VAL290 VAL291 GLU292 HIS293 THR294 GLU295 ALA296 SER297 LYS298 ALA299 LEU300 ASN301 ARG302 ALA303 PRO304 GLY305 PRO306 MET307 VAL308 VAL309 LEU310 ALA311 GLY312 SER313 GLY314 MET315 LEU316 ALA317 GLY318 GLY319 ARG320 ILE321 LEU322 HIS323 HIS324 LEU325 LYS326 HIS327 GLY328 LEU329 SER330 ASP331 PRO332 ARG333 ASN334 ALA335 LEU336 VAL337 PHE338 VAL339 GLY340 TYR341 GLN342 PRO343 GLN344 GLY345 GLY346 LEU347 GLY348 ALA349 GLU350 ILE351 ILE352 ALA353 ARG354 PRO355 PRO356 ALA357 VAL358 ARG359 ILE360 LEU361 GLY362 GLU363 GLU364 VAL365 PRO366 LEU367 ARG368 ALA369 SER370 VAL371 HIS372 THR373 LEU374 GLY375 GLY376 PHE377 SER378 GLY379 HIS380 ALA381 GLY382 GLN383 ASP384 GLU385 LEU386 LEU387 ASP388 TRP389 LEU390 GLN391 GLY392 GLU393 PRO394 ARG395 VAL396 VAL397 LEU398 VAL399 HIS400 GLY401 GLU402 GLU403 GLU404 LYS405 LEU406 LEU407 ALA408 LEU409 GLY410 LYS411 LEU412 LEU413 ALA414 LEU415 ARG416 GLY417 GLN418 GLU419 VAL420 SER421 LEU422 ALA423 ARG424 PHE425 GLY426 GLU427 GLY428 VAL429 PRO430 VAL431
Unit 4 MET1 ARG2 ILE3 VAL4 PRO5 PHE6 GLY7 ALA8 ALA9 ARG10 GLU11 VAL12 THR13 GLY14 SER15 ALA16 HIS17 LEU18 LEU19 LEU20 ALA21 GLY22 GLY23 ARG24 ARG25 VAL26 LEU27 LEU28 ASP29 CYS30 GLY31 MET32 PHE33 GLN34 GLY35 LYS36 GLU37 GLU38 ALA39 ARG40 ASN41 HIS42 ALA43 PRO44 PHE45 GLY46 PHE47 ASP48 PRO49 LYS50 GLU51 VAL52 ASP53 ALA54 VAL55 LEU56 LEU57 THR58 HIS59 ALA60 HIS61 LEU62 ASP63 HIS64 VAL65 GLY66 ARG67 LEU68 PRO69 LYS70 LEU71 PHE72 ARG73 GLU74 GLY75 TYR76 ARG77 GLY78 PRO79 VAL80 TYR81 ALA82 THR83 ARG84 ALA85 THR86 VAL87 LEU88 LEU89 MET90 GLU91 ILE92 VAL93 LEU94 GLU95 ASP96 ALA97 LEU98 LYS99 VAL100 MET101 ASP102 GLU103 PRO104 PHE105 PHE106 GLY107 PRO108 GLU109 ASP110 VAL111 GLU112 GLU113 ALA114 LEU115 GLY116 HIS117 LEU118 ARG119 PRO120 LEU121 GLU122 TYR123 GLY124 GLU125 TRP126 LEU127 ARG128 LEU129 GLY130 ALA131 LEU132 SER133 LEU134 ALA135 PHE136 GLY137 GLN138 ALA139 GLY140 HIS141 LEU142 PRO143 GLY144 SER145 ALA146 PHE147 VAL148 VAL149 ALA150 GLN151 GLY152 GLU153 GLY154 ARG155 THR156 LEU157 VAL158 TYR159 SER160 GLY161 ASP162 LEU163 GLY164 ASN165 ARG166 GLU167 LYS168 ASP169 VAL170 LEU171 PRO172 ASP173 PRO174 SER175 LEU176 PRO177 PRO178 LEU179 ALA180 ASP181 LEU182 VAL183 LEU184 ALA185 GLU186 GLY187 THR188 TYR189 GLY190 ASP191 ARG192 PRO193 HIS194 ARG195 PRO196 TYR197 ARG198 GLU199 THR200 VAL201 ARG202 GLU203 PHE204 LEU205 GLU206 ILE207 LEU208 GLU209 LYS210 THR211 LEU212 SER213 GLN214 GLY215 GLY216 LYS217 VAL218 LEU219 ILE220 PRO221 THR222 PHE223 ALA224 VAL225 GLU226 ARG227 ALA228 GLN229 GLU230 ILE231 LEU232 TYR233 VAL234 LEU235 TYR236 THR237 HIS238 GLY239 HIS240 ARG241 LEU242 PRO243 ARG244 ALA245 PRO246 ILE247 TYR248 LEU249 ASP250 SER251 PRO252 MET253 ALA254 GLY255 ARG256 VAL257 LEU258 SER259 LEU260 TYR261 PRO262 ARG263 LEU264 VAL265 ARG266 TYR267 PHE268 SER269 GLU270 GLU271 VAL272 GLN273 ALA274 HIS275 PHE276 LEU277 GLN278 GLY279 LYS280 ASN281 PRO282 PHE283 ARG284 PRO285 ALA286 GLY287 LEU288 GLU289 VAL290 VAL291 GLU292 HIS293 THR294 GLU295 ALA296 SER297 LYS298 ALA299 LEU300 ASN301 ARG302 ALA303 PRO304 GLY305 PRO306 MET307 VAL308 VAL309 LEU310 ALA311 GLY312 SER313 GLY314 MET315 LEU316 ALA317 GLY318 GLY319 ARG320 ILE321 LEU322 HIS323 HIS324 LEU325 LYS326 HIS327 GLY328 LEU329 SER330 ASP331 PRO332 ARG333 ASN334 ALA335 LEU336 VAL337 PHE338 VAL339 GLY340 TYR341 GLN342 PRO343 GLN344 GLY345 GLY346 LEU347 GLY348 ALA349 GLU350 ILE351 ILE352 ALA353 ARG354 PRO355 PRO356 ALA357 VAL358 ARG359 ILE360 LEU361 GLY362 GLU363 GLU364 VAL365 PRO366 LEU367 ARG368 ALA369 SER370 VAL371 HIS372 THR373 LEU374 GLY375 GLY376 PHE377 SER378 GLY379 HIS380 ALA381 GLY382 GLN383 ASP384 GLU385 LEU386 LEU387 ASP388 TRP389 LEU390 GLN391 GLY392 GLU393 PRO394 ARG395 VAL396 VAL397 LEU398 VAL399 HIS400 GLY401 GLU402 GLU403 GLU404 LYS405 LEU406 LEU407 ALA408 LEU409 GLY410 LYS411 LEU412 LEU413 ALA414 LEU415 ARG416 GLY417 GLN418 GLU419 VAL420 SER421 LEU422 ALA423 ARG424 PHE425 GLY426 GLU427 GLY428 VAL429 PRO430 VAL431
Ligands
Unit 5 SO4432 SO4433 SO4434 SO4435 SO4436 SO4437 SO4438 SO4439 SO4440 SO4441 SO4442 SO4443 SO4444 SO4445 SO4446 SO4447 SO4448 SO4449 SO4450 SO4451 SO4452 SO4453 SO4454 SO4455 SO4456 SO4457 SO4458 SO4459 SO4460 SO4461 SO4462 SO4463 FLC464 U5P465 U5P466 U5P467 ZN468 ZN469
Unit 6 SO4432 SO4433 SO4434 SO4435 SO4436 SO4437 SO4438 SO4439 SO4440 SO4441 SO4442 SO4443 SO4444 SO4445 SO4446 SO4447 SO4448 SO4449 SO4450 SO4451 SO4452 SO4453 SO4454 FLC455 U5P456 U5P457 ZN458 ZN459
Unit 7 SO4432 SO4433 SO4434 SO4435 SO4436 SO4437 SO4438 SO4439 SO4440 SO4441 SO4442 SO4443 SO4444 SO4445 SO4446 SO4447 SO4448 SO4449 SO4450 SO4451 SO4452 SO4453 SO4454 SO4455 SO4456 U5P457 ZN458 ZN459
Unit 8 SO4432 SO4433 SO4434 SO4435 SO4436 SO4437 SO4438 SO4439 SO4440 SO4441 SO4442 SO4443 SO4444 SO4445 SO4446 SO4447 U5P448 ZN449 ZN450
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany