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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8, A RNA DEGRADATION PROTEIN OF THE METALLO-BETA-LACTAMASE SUPERFAMILY
 
Authors :  I. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  10 Apr 06  (Deposition) - 05 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,C  (1x)
Keywords :  Beta-Casp Family, Metallo-Beta-Lactamase, Ribonuclease, Rnase E, Thermus Thermophilus, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily
J. Biochem. (Tokyo) V. 140 535 2006
PubMed-ID: 16945939  |  Reference-DOI: 10.1093/JB/MVJ183

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: TTHA0252 PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): A C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 36)

Asymmetric Unit (2, 36)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
2ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 5 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:433BINDING SITE FOR RESIDUE ZN A 432
2AC2SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:432BINDING SITE FOR RESIDUE ZN A 433
3AC3SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:433BINDING SITE FOR RESIDUE ZN B 432
4AC4SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:432BINDING SITE FOR RESIDUE ZN B 433
5AC5SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:433BINDING SITE FOR RESIDUE ZN C 432
6AC6SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:432BINDING SITE FOR RESIDUE ZN C 433
7AC7SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , ZN D:433BINDING SITE FOR RESIDUE ZN D 432
8AC8SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , ZN D:432BINDING SITE FOR RESIDUE ZN D 433

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DKF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DKF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DKF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DKF)

(-) Exons   (0, 0)

(no "Exon" information available for 2DKF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d2dkfa1 A:1-431 Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........eeeeee..eeeeeee...hhhhh.........hhhhh.eee..........hhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.eee......ee....eeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhh...eeeeee.......hhhhhhhh.......eeee.........hhhhhh...eeee..eeee...eeee........hhhhhhhhhh....eeee..hhhhhhhhhhhhhh....ee.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dkf A   1 mRIVPFGAAREVTGSAHLLLAGGRRVLLDCGmFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLmEIVLEDALKVmDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPmAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPmVVLAGSGmLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                            |       10        20        30 |      40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  |    260       270       280       290       300      |310    |  320       330       340       350       360       370       380       390       400       410       420       430 
                            |                             32-MSE                                                    90-MSE    101-MSE                                                                                                                                                 253-MSE                                               307-MSE 315-MSE                                                                                                                
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d2dkfb_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.........................eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhheee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhh...eeeee.......hhhhhhhhh.......eeee.........hhhhhhh..eeee..eeee...eeee........hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhh..eee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dkf B   1 mRIVPFGAAREVTGSAHLLLAGGRRVLLDCGmFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLmEIVLEDALKVmDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPmAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPmVVLAGSGmLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                            |       10        20        30 |      40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  |    260       270       280       290       300      |310    |  320       330       340       350       360       370       380       390       400       410       420       430 
                            1-MSE                         32-MSE                                                    90-MSE    101-MSE                                                                                                                                                 253-MSE                                               307-MSE 315-MSE                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d2dkfc_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee...................hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......ee....eeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.........eeeehhhhhhhhhhh..hhhhhhhhhhhhhhh..............hhhhhhhhhhh...eeeee..........hhhhhh.......eeee..................eee....eee...eeee........hhhhhhhhhh....eeee..hhhhhhhhhhhhhhh...eee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dkf C   1 mRIVPFGAAREVTGSAHLLLAGGRRVLLDCGmFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLmEIVLEDALKVmDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPmAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPmVVLAGSGmLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                            |       10        20        30 |      40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  |    260       270       280       290       300      |310    |  320       330       340       350       360       370       380       390       400       410       420       430 
                            1-MSE                         32-MSE                                                    90-MSE    101-MSE                                                                                                                                                 253-MSE                                               307-MSE 315-MSE                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d2dkfd_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh..........eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhh........hhhhhhhhhh.eee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh....eeee.....hhhhhh.hhhhhhhhhhhhhhhh..............hhhhhhhhhh....eeeee.......hhhhhhhhh.........ee...........hhhhh..eee....eee.....ee........hhhhhhhhhh....eeee..hhhhhhhhhhhhhhh....ee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dkf D   1 mRIVPFGAAREVTGSAHLLLAGGRRVLLDCGmFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLmEIVLEDALKVmDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPmAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPmVVLAGSGmLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                            |       10        20        30 |      40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  |    260       270       280       290       300      |310    |  320       330       340       350       360       370       380       390       400       410       420       430 
                            1-MSE                         32-MSE                                                    90-MSE    101-MSE                                                                                                                                                 253-MSE                                               307-MSE 315-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DKF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DKF)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2dkf
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  RNSE_THET8 | Q5SLP1
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        RNSE_THET8 | Q5SLP1: 3a4y 3idz 3ie0 3ie1 3ie2 3iek 3iel 3iem

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2az4 RELATED ID: TTK003001672.1 RELATED DB: TARGETDB