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3IEL
Biol. Unit 1
Info
Asym.Unit (298 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH UMP
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
23 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Ump
To Be Published
[
close entry info
]
Hetero Components
(3, 36)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
3b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
3c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
3d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
3e: URIDINE-5'-MONOPHOSPHATE (U5Pe)
3f: URIDINE-5'-MONOPHOSPHATE (U5Pf)
3g: URIDINE-5'-MONOPHOSPHATE (U5Pg)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
32
Ligand/Ion
SULFATE ION
3
U5P
3
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC6 (SOFTWARE)
39: GC6 (SOFTWARE)
40: HC2 (SOFTWARE)
41: IC3 (SOFTWARE)
42: LC3 (SOFTWARE)
43: LC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:424 , ARG C:73 , HOH C:493
BINDING SITE FOR RESIDUE SO4 A 432
02
AC2
SOFTWARE
GLU A:153
BINDING SITE FOR RESIDUE SO4 A 433
03
AC3
SOFTWARE
LYS A:99 , ARG A:256
BINDING SITE FOR RESIDUE SO4 A 434
04
AC4
SOFTWARE
GLU A:199 , ARG A:202 , SER D:330
BINDING SITE FOR RESIDUE SO4 A 435
05
AC5
SOFTWARE
ARG A:198 , ARG A:202 , HOH A:520
BINDING SITE FOR RESIDUE SO4 A 436
06
AC6
SOFTWARE
THR A:222 , PHE A:223 , ALA A:224 , SER A:313 , GLY A:314
BINDING SITE FOR RESIDUE SO4 A 437
07
AC7
SOFTWARE
PRO A:304 , ARG A:333
BINDING SITE FOR RESIDUE SO4 A 438
08
AC8
SOFTWARE
PRO A:243 , ARG A:244
BINDING SITE FOR RESIDUE SO4 A 439
09
AC9
SOFTWARE
PRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , HOH A:489 , ARG D:84
BINDING SITE FOR RESIDUE SO4 A 440
10
BC1
SOFTWARE
ARG A:24 , LEU A:129 , GLY A:130
BINDING SITE FOR RESIDUE SO4 A 441
11
BC2
SOFTWARE
PHE A:47 , ASP A:48 , PRO A:49 , FLC A:464
BINDING SITE FOR RESIDUE SO4 A 442
12
BC3
SOFTWARE
ARG A:359 , GLY A:362 , HOH A:523 , ARG C:359
BINDING SITE FOR RESIDUE SO4 A 443
13
BC4
SOFTWARE
ARG A:359 , ARG C:359 , GLU C:364
BINDING SITE FOR RESIDUE SO4 A 444
14
BC5
SOFTWARE
ARG A:73 , HOH A:561 , ARG C:424
BINDING SITE FOR RESIDUE SO4 A 445
15
BC6
SOFTWARE
GLN A:383 , LEU A:412
BINDING SITE FOR RESIDUE SO4 A 446
16
BC7
SOFTWARE
HIS A:293 , ARG B:284
BINDING SITE FOR RESIDUE SO4 A 447
17
BC8
SOFTWARE
GLN A:34 , LEU A:62 , ASP A:63
BINDING SITE FOR RESIDUE SO4 A 448
18
BC9
SOFTWARE
GLY A:319
BINDING SITE FOR RESIDUE SO4 A 449
19
CC1
SOFTWARE
ARG A:354
BINDING SITE FOR RESIDUE SO4 A 450
20
CC2
SOFTWARE
ARG A:354 , ALA A:369 , SER A:370 , VAL A:371 , HOH A:524 , GLY D:362 , SO4 D:442
BINDING SITE FOR RESIDUE SO4 A 451
21
CC3
SOFTWARE
PRO A:366 , ARG A:368
BINDING SITE FOR RESIDUE SO4 A 452
22
CC4
SOFTWARE
LYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327
BINDING SITE FOR RESIDUE SO4 A 453
23
CC5
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 454
24
CC6
SOFTWARE
HIS A:293 , THR A:294 , ARG A:320
BINDING SITE FOR RESIDUE SO4 A 455
25
CC7
SOFTWARE
MET A:1 , ARG A:2 , GLU A:153
BINDING SITE FOR RESIDUE SO4 A 456
26
CC8
SOFTWARE
ARG A:192 , HOH A:587
BINDING SITE FOR RESIDUE SO4 A 457
27
CC9
SOFTWARE
ARG A:368
BINDING SITE FOR RESIDUE SO4 A 458
28
DC1
SOFTWARE
ARG A:77 , GLU A:113 , HIS A:117
BINDING SITE FOR RESIDUE SO4 A 459
29
DC2
SOFTWARE
ASN A:281 , HOH A:553
BINDING SITE FOR RESIDUE SO4 A 460
30
DC3
SOFTWARE
ARG A:24
BINDING SITE FOR RESIDUE SO4 A 461
31
DC4
SOFTWARE
ARG A:192 , TYR A:341 , LYS A:405 , U5P A:465
BINDING SITE FOR RESIDUE SO4 A 463
32
DC5
SOFTWARE
GLY A:46 , SO4 A:442 , PRO C:44 , PHE C:45 , GLY C:46 , PHE C:47 , ASP C:48 , PRO C:49 , GLU C:74
BINDING SITE FOR RESIDUE FLC A 464
33
DC6
SOFTWARE
VAL A:12 , THR A:188 , TYR A:189 , ARG A:192 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379 , HIS A:380 , GLU A:402 , LYS A:405 , SO4 A:463 , HOH A:472
BINDING SITE FOR RESIDUE U5P A 465
34
DC7
SOFTWARE
ARG A:2 , VAL A:4 , PHE A:6 , LEU A:20 , ARG A:25 , GLY A:46 , PHE A:47 , GLY A:426 , GLY A:428
BINDING SITE FOR RESIDUE U5P A 466
35
DC8
SOFTWARE
LEU A:88 , GLU A:91 , ARG A:263 , HOH A:579 , LEU D:277
BINDING SITE FOR RESIDUE U5P A 467
36
DC9
SOFTWARE
ASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:469
BINDING SITE FOR RESIDUE ZN A 468
37
EC1
SOFTWARE
HIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:468 , HOH A:472
BINDING SITE FOR RESIDUE ZN A 469
38
EC6
SOFTWARE
TYR A:248 , GLU A:289 , ALA A:296 , HOH A:502 , HOH A:525 , TYR B:248 , GLU B:289 , VAL B:291 , ALA B:296 , HOH B:491 , HOH B:518
BINDING SITE FOR RESIDUE SO4 B 436
39
GC6
SOFTWARE
LEU A:407 , LYS A:411 , HOH A:582 , LEU B:407 , LYS B:411
BINDING SITE FOR RESIDUE FLC B 455
40
HC2
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 432
41
IC3
SOFTWARE
ARG A:359 , ARG C:359 , GLY C:362
BINDING SITE FOR RESIDUE SO4 C 442
42
LC3
SOFTWARE
ARG A:195 , LYS D:298 , ASN D:301 , HIS D:323 , HIS D:327 , HOH D:464
BINDING SITE FOR RESIDUE SO4 D 441
43
LC4
SOFTWARE
SER A:370 , HIS A:372 , SO4 A:451 , GLY D:362
BINDING SITE FOR RESIDUE SO4 D 442
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iela_ (A:)
1b: SCOP_d3ielb_ (B:)
1c: SCOP_d3ielc_ (C:)
1d: SCOP_d3ield_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3iela_
A:
1b
d3ielb_
B:
1c
d3ielc_
C:
1d
d3ield_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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