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(-) Description

Title :  CRYSTAL STRUCTURE OF H400V MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  22 Jul 09  (Deposition) - 04 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of H400V Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 70)

Asymmetric Unit (3, 70)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2SO465Ligand/IonSULFATE ION
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 25)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2SO424Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 19)
No.NameCountTypeFull Name
1BTB-1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2SO419Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 14)
No.NameCountTypeFull Name
1BTB-1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2SO414Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1BTB-1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2SO48Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (70, 70)

Asymmetric Unit (70, 70)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379BINDING SITE FOR RESIDUE SO4 A 432
02AC2SOFTWAREMET A:1 , ARG A:2 , LEU A:20BINDING SITE FOR RESIDUE SO4 A 433
03AC3SOFTWAREGLU A:292 , HIS A:293 , THR A:294 , BTB A:456BINDING SITE FOR RESIDUE SO4 A 434
04AC4SOFTWAREARG A:2 , ARG A:25BINDING SITE FOR RESIDUE SO4 A 435
05AC5SOFTWARESO4 A:453BINDING SITE FOR RESIDUE SO4 A 436
06AC6SOFTWAREGLU A:199 , ARG A:202BINDING SITE FOR RESIDUE SO4 A 437
07AC7SOFTWAREPRO A:243 , ARG A:244 , ARG B:302BINDING SITE FOR RESIDUE SO4 A 438
08AC8SOFTWAREARG A:284 , HOH A:460BINDING SITE FOR RESIDUE SO4 A 439
09AC9SOFTWARELEU A:407 , GLY A:410 , LYS A:411 , ALA A:414 , GLY B:410 , LYS B:411 , ALA B:414BINDING SITE FOR RESIDUE SO4 A 440
10BC1SOFTWAREARG A:24 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 441
11BC2SOFTWAREARG A:2 , GLY A:426 , GLY A:428BINDING SITE FOR RESIDUE SO4 A 442
12BC3SOFTWARETHR A:222 , PHE A:223 , ALA A:224 , SER A:313 , GLY A:314BINDING SITE FOR RESIDUE SO4 A 443
13BC4SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 444
14BC5SOFTWAREARG A:354BINDING SITE FOR RESIDUE SO4 A 445
15BC6SOFTWAREARG A:333BINDING SITE FOR RESIDUE SO4 A 446
16BC7SOFTWAREPRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 447
17BC8SOFTWARELYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 448
18BC9SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , ARG D:84BINDING SITE FOR RESIDUE SO4 A 449
19CC1SOFTWAREHIS A:293BINDING SITE FOR RESIDUE SO4 A 450
20CC2SOFTWAREHIS A:323BINDING SITE FOR RESIDUE SO4 A 451
21CC3SOFTWAREARG A:73 , ARG C:10BINDING SITE FOR RESIDUE SO4 A 452
22CC4SOFTWARELEU A:88 , ARG A:263 , SO4 A:436BINDING SITE FOR RESIDUE SO4 A 453
23CC5SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 454
24CC6SOFTWARELYS A:99 , PRO A:252 , ARG A:256 , BTB A:456BINDING SITE FOR RESIDUE SO4 A 455
25CC7SOFTWAREPRO A:252 , THR A:294 , GLY A:319 , ARG A:320 , SO4 A:434 , SO4 A:455BINDING SITE FOR RESIDUE BTB A 456
26CC8SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162BINDING SITE FOR RESIDUE ZN A 457
27CC9SOFTWAREARG B:354BINDING SITE FOR RESIDUE SO4 B 432
28DC1SOFTWAREARG B:359 , GLY B:362BINDING SITE FOR RESIDUE SO4 B 433
29DC2SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 434
30DC3SOFTWAREARG B:24BINDING SITE FOR RESIDUE SO4 B 435
31DC4SOFTWAREARG B:10 , ARG B:424 , PHE B:425BINDING SITE FOR RESIDUE SO4 B 436
32DC5SOFTWAREPHE B:223 , ALA B:224 , SER B:313 , GLY B:314BINDING SITE FOR RESIDUE SO4 B 437
33DC6SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 438
34DC7SOFTWAREARG A:244 , LYS B:298 , HIS B:323 , LYS B:326 , HIS B:327BINDING SITE FOR RESIDUE SO4 B 439
35DC8SOFTWAREARG B:302 , PRO B:304 , ARG B:333BINDING SITE FOR RESIDUE SO4 B 440
36DC9SOFTWAREARG B:192 , PRO B:193 , ARG B:195BINDING SITE FOR RESIDUE SO4 B 441
37EC1SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 442
38EC2SOFTWAREARG B:84 , LEU B:88 , ARG B:263BINDING SITE FOR RESIDUE SO4 B 443
39EC3SOFTWAREARG B:73BINDING SITE FOR RESIDUE SO4 B 444
40EC4SOFTWAREHIS B:293 , THR B:294 , ARG B:320BINDING SITE FOR RESIDUE SO4 B 445
41EC5SOFTWAREARG B:2 , GLY B:428BINDING SITE FOR RESIDUE SO4 B 446
42EC6SOFTWAREARG B:25 , PHE B:47 , ASP B:48BINDING SITE FOR RESIDUE SO4 B 447
43EC7SOFTWAREHIS B:61 , LEU B:62 , ASP B:63BINDING SITE FOR RESIDUE SO4 B 448
44EC8SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 449
45EC9SOFTWARETYR B:189 , PHE B:223 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , HIS B:380BINDING SITE FOR RESIDUE SO4 B 450
46FC1SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162BINDING SITE FOR RESIDUE ZN B 451
47FC2SOFTWARETYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , HIS C:380BINDING SITE FOR RESIDUE SO4 C 432
48FC3SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 433
49FC4SOFTWARELYS C:298 , ASN C:301 , HIS C:323 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 434
50FC5SOFTWAREARG C:84 , ARG C:263 , HOH C:455BINDING SITE FOR RESIDUE SO4 C 435
51FC6SOFTWAREARG C:155BINDING SITE FOR RESIDUE SO4 C 436
52FC7SOFTWAREGLU C:292 , HIS C:293BINDING SITE FOR RESIDUE SO4 C 437
53FC8SOFTWAREARG C:25 , GLY C:46 , PHE C:47 , ASP C:48BINDING SITE FOR RESIDUE SO4 C 438
54FC9SOFTWAREARG C:24 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 439
55GC1SOFTWAREMET C:1 , ARG C:2BINDING SITE FOR RESIDUE SO4 C 440
56GC2SOFTWAREHIS C:61 , LEU C:62 , VAL C:225BINDING SITE FOR RESIDUE SO4 C 441
57GC3SOFTWAREARG C:2 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 442
58GC4SOFTWAREARG C:24BINDING SITE FOR RESIDUE SO4 C 443
59GC5SOFTWAREARG B:266 , GLN B:273 , LEU B:277 , VAL C:265 , ARG C:266 , GLN C:273 , LEU C:277BINDING SITE FOR RESIDUE SO4 C 444
60GC6SOFTWAREARG C:10 , ARG C:424BINDING SITE FOR RESIDUE SO4 C 445
61GC7SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , HOH C:447BINDING SITE FOR RESIDUE ZN C 446
62GC8SOFTWARETYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379 , HIS D:380BINDING SITE FOR RESIDUE SO4 D 432
63GC9SOFTWAREARG D:24 , ARG D:128 , LEU D:129 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 433
64HC1SOFTWAREPRO D:252 , MET D:253 , ARG D:256BINDING SITE FOR RESIDUE SO4 D 434
65HC2SOFTWAREPRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 435
66HC3SOFTWAREARG D:2 , LYS D:50 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 436
67HC4SOFTWAREARG D:77 , HIS D:117BINDING SITE FOR RESIDUE SO4 D 437
68HC5SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 438
69HC6SOFTWAREARG D:263BINDING SITE FOR RESIDUE SO4 D 439
70HC7SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162BINDING SITE FOR RESIDUE ZN D 440

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IE2)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IE2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IE2)

(-) Exons   (0, 0)

(no "Exon" information available for 3IE2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie2a_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhhh..eee....eee...eeee.hhhh...hhhhhhhhh....eeeee..hhhhhhhhhhhhhhhh.eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie2 A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVVGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie2b_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........eeeeee..eeeeeee......hhhhhhh..........eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhhh..eee....eee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie2 B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVVGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie2c_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee..hhhhhh........eeeee.......hhhhhhhhh.......eeee.......hhhhhhhh...eee....eee...eeee.hhhh...hhhhhhhhh.....eeee..hhhhhhhhhhhhhhh............ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie2 C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVVGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie2d_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee............eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee......eee..eeeeeee.......eeeeeee..eeee........................eeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhh..hhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee........hhhhhhhhhhh....eeee.......hhhhhhhhh..ee......ee...eeee........hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie2 D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVVGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IE2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IE2)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3ie2
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  RNSE_THET8 | Q5SLP1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3idz 3ie0 3ie1 3iek 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONIE DERIVATIVE
3a4y H61A MUTANT
3idz S378Q MUTANT
3ie0 S378Y MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3iek NATIVE
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG RELATED ID: TTK003001672.2 RELATED DB: TARGETDB