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3IEL
Biol. Unit 3
Info
Asym.Unit (298 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH UMP
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
23 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Ump
To Be Published
[
close entry info
]
Hetero Components
(2, 26)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
3b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
3c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
3d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
3e: URIDINE-5'-MONOPHOSPHATE (U5Pe)
3f: URIDINE-5'-MONOPHOSPHATE (U5Pf)
3g: URIDINE-5'-MONOPHOSPHATE (U5Pg)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
-1
Ligand/Ion
CITRATE ANION
2
SO4
25
Ligand/Ion
SULFATE ION
3
U5P
1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: DC5 (SOFTWARE)
06: HC2 (SOFTWARE)
07: HC3 (SOFTWARE)
08: HC4 (SOFTWARE)
09: HC5 (SOFTWARE)
10: HC6 (SOFTWARE)
11: HC7 (SOFTWARE)
12: HC8 (SOFTWARE)
13: HC9 (SOFTWARE)
14: IC1 (SOFTWARE)
15: IC2 (SOFTWARE)
16: IC3 (SOFTWARE)
17: IC4 (SOFTWARE)
18: IC5 (SOFTWARE)
19: IC6 (SOFTWARE)
20: IC7 (SOFTWARE)
21: IC8 (SOFTWARE)
22: IC9 (SOFTWARE)
23: JC1 (SOFTWARE)
24: JC2 (SOFTWARE)
25: JC3 (SOFTWARE)
26: JC4 (SOFTWARE)
27: JC5 (SOFTWARE)
28: JC6 (SOFTWARE)
29: JC7 (SOFTWARE)
30: JC8 (SOFTWARE)
31: JC9 (SOFTWARE)
32: KC1 (SOFTWARE)
33: KC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:424 , ARG C:73 , HOH C:493
BINDING SITE FOR RESIDUE SO4 A 432
02
BC3
SOFTWARE
ARG A:359 , GLY A:362 , HOH A:523 , ARG C:359
BINDING SITE FOR RESIDUE SO4 A 443
03
BC4
SOFTWARE
ARG A:359 , ARG C:359 , GLU C:364
BINDING SITE FOR RESIDUE SO4 A 444
04
BC5
SOFTWARE
ARG A:73 , HOH A:561 , ARG C:424
BINDING SITE FOR RESIDUE SO4 A 445
05
DC5
SOFTWARE
GLY A:46 , SO4 A:442 , PRO C:44 , PHE C:45 , GLY C:46 , PHE C:47 , ASP C:48 , PRO C:49 , GLU C:74
BINDING SITE FOR RESIDUE FLC A 464
06
HC2
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 432
07
HC3
SOFTWARE
VAL C:290 , GLU C:292 , HIS C:293
BINDING SITE FOR RESIDUE SO4 C 433
08
HC4
SOFTWARE
ARG C:24 , LEU C:129 , GLY C:130
BINDING SITE FOR RESIDUE SO4 C 434
09
HC5
SOFTWARE
THR C:222 , PHE C:223 , ALA C:224 , SER C:313 , GLY C:314
BINDING SITE FOR RESIDUE SO4 C 435
10
HC6
SOFTWARE
HOH C:477
BINDING SITE FOR RESIDUE SO4 C 436
11
HC7
SOFTWARE
ARG C:302
BINDING SITE FOR RESIDUE SO4 C 437
12
HC8
SOFTWARE
MET C:1 , ARG C:2
BINDING SITE FOR RESIDUE SO4 C 438
13
HC9
SOFTWARE
ARG C:24 , LYS C:50
BINDING SITE FOR RESIDUE SO4 C 439
14
IC1
SOFTWARE
ARG C:25 , PHE C:47 , ASP C:48
BINDING SITE FOR RESIDUE SO4 C 440
15
IC2
SOFTWARE
ARG C:84
BINDING SITE FOR RESIDUE SO4 C 441
16
IC3
SOFTWARE
ARG A:359 , ARG C:359 , GLY C:362
BINDING SITE FOR RESIDUE SO4 C 442
17
IC4
SOFTWARE
GLY C:426 , GLY C:428
BINDING SITE FOR RESIDUE SO4 C 443
18
IC5
SOFTWARE
ARG C:155
BINDING SITE FOR RESIDUE SO4 C 444
19
IC6
SOFTWARE
PRO C:172 , ASP C:173 , SER C:269 , GLU C:270
BINDING SITE FOR RESIDUE SO4 C 445
20
IC7
SOFTWARE
ARG C:368
BINDING SITE FOR RESIDUE SO4 C 446
21
IC8
SOFTWARE
GLN C:344 , GLY C:345
BINDING SITE FOR RESIDUE SO4 C 447
22
IC9
SOFTWARE
ARG C:77 , HIS C:117
BINDING SITE FOR RESIDUE SO4 C 448
23
JC1
SOFTWARE
HIS C:240
BINDING SITE FOR RESIDUE SO4 C 449
24
JC2
SOFTWARE
ARG C:2 , ARG C:25 , HOH C:492
BINDING SITE FOR RESIDUE SO4 C 450
25
JC3
SOFTWARE
ARG C:84 , LEU C:88 , ARG C:263 , HOH C:462
BINDING SITE FOR RESIDUE SO4 C 451
26
JC4
SOFTWARE
LYS C:411
BINDING SITE FOR RESIDUE SO4 C 452
27
JC5
SOFTWARE
LYS C:298 , HIS C:323 , HIS C:327
BINDING SITE FOR RESIDUE SO4 C 453
28
JC6
SOFTWARE
SER C:330 , PRO C:366 , ARG C:368
BINDING SITE FOR RESIDUE SO4 C 454
29
JC7
SOFTWARE
ARG C:10 , ARG C:424 , HOH C:499
BINDING SITE FOR RESIDUE SO4 C 455
30
JC8
SOFTWARE
HIS C:327 , LYS D:411
BINDING SITE FOR RESIDUE SO4 C 456
31
JC9
SOFTWARE
VAL C:12 , THR C:188 , TYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , HIS C:380 , HIS C:400 , GLU C:402 , LYS C:405 , HOH C:479
BINDING SITE FOR RESIDUE U5P C 457
32
KC1
SOFTWARE
ASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:459
BINDING SITE FOR RESIDUE ZN C 458
33
KC2
SOFTWARE
HIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:458 , HOH C:479
BINDING SITE FOR RESIDUE ZN C 459
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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[
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iela_ (A:)
1b: SCOP_d3ielb_ (B:)
1c: SCOP_d3ielc_ (C:)
1d: SCOP_d3ield_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3iela_
A:
1b
d3ielb_
B:
1c
d3ielc_
C:
1d
d3ield_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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all PFAM domains
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Chain C
Asymmetric Unit 1
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