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3IEL
Biol. Unit 2
Info
Asym.Unit (298 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH UMP
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
23 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Ump
To Be Published
[
close entry info
]
Hetero Components
(3, 26)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
3b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
3c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
3d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
3e: URIDINE-5'-MONOPHOSPHATE (U5Pe)
3f: URIDINE-5'-MONOPHOSPHATE (U5Pf)
3g: URIDINE-5'-MONOPHOSPHATE (U5Pg)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
23
Ligand/Ion
SULFATE ION
3
U5P
2
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: BC7 (SOFTWARE)
02: CC5 (SOFTWARE)
03: EC2 (SOFTWARE)
04: EC3 (SOFTWARE)
05: EC4 (SOFTWARE)
06: EC5 (SOFTWARE)
07: EC6 (SOFTWARE)
08: EC7 (SOFTWARE)
09: EC8 (SOFTWARE)
10: EC9 (SOFTWARE)
11: FC1 (SOFTWARE)
12: FC2 (SOFTWARE)
13: FC3 (SOFTWARE)
14: FC4 (SOFTWARE)
15: FC5 (SOFTWARE)
16: FC6 (SOFTWARE)
17: FC7 (SOFTWARE)
18: FC8 (SOFTWARE)
19: FC9 (SOFTWARE)
20: GC1 (SOFTWARE)
21: GC2 (SOFTWARE)
22: GC3 (SOFTWARE)
23: GC4 (SOFTWARE)
24: GC5 (SOFTWARE)
25: GC6 (SOFTWARE)
26: GC7 (SOFTWARE)
27: GC8 (SOFTWARE)
28: GC9 (SOFTWARE)
29: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
HIS A:293 , ARG B:284
BINDING SITE FOR RESIDUE SO4 A 447
02
CC5
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 454
03
EC2
SOFTWARE
PHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:550
BINDING SITE FOR RESIDUE SO4 B 432
04
EC3
SOFTWARE
LYS B:298 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327 , HOH B:473
BINDING SITE FOR RESIDUE SO4 B 433
05
EC4
SOFTWARE
ARG B:192 , PRO B:193 , HIS B:194 , ARG B:195 , GLY B:375
BINDING SITE FOR RESIDUE SO4 B 434
06
EC5
SOFTWARE
PRO B:304
BINDING SITE FOR RESIDUE SO4 B 435
07
EC6
SOFTWARE
TYR A:248 , GLU A:289 , ALA A:296 , HOH A:502 , HOH A:525 , TYR B:248 , GLU B:289 , VAL B:291 , ALA B:296 , HOH B:491 , HOH B:518
BINDING SITE FOR RESIDUE SO4 B 436
08
EC7
SOFTWARE
PRO B:243 , ARG B:244
BINDING SITE FOR RESIDUE SO4 B 437
09
EC8
SOFTWARE
TYR B:236 , HOH B:526
BINDING SITE FOR RESIDUE SO4 B 438
10
EC9
SOFTWARE
GLY B:319 , SO4 B:453
BINDING SITE FOR RESIDUE SO4 B 439
11
FC1
SOFTWARE
LEU B:387 , LEU B:412 , ARG B:416 , HOH B:517 , HOH B:520
BINDING SITE FOR RESIDUE SO4 B 440
12
FC2
SOFTWARE
ARG B:359 , GLY B:362
BINDING SITE FOR RESIDUE SO4 B 441
13
FC3
SOFTWARE
ARG B:84 , ARG B:263 , HOH B:549
BINDING SITE FOR RESIDUE SO4 B 442
14
FC4
SOFTWARE
ARG B:24 , LEU B:129 , GLY B:130
BINDING SITE FOR RESIDUE SO4 B 443
15
FC5
SOFTWARE
GLU B:292 , HIS B:293 , THR B:294 , SO4 B:449 , HOH B:521
BINDING SITE FOR RESIDUE SO4 B 444
16
FC6
SOFTWARE
PRO B:172 , ASP B:173 , SER B:269 , GLU B:270 , HOH B:487
BINDING SITE FOR RESIDUE SO4 B 445
17
FC7
SOFTWARE
ARG B:354 , SER B:370 , VAL B:371 , HOH B:541
BINDING SITE FOR RESIDUE SO4 B 446
18
FC8
SOFTWARE
VAL B:371 , HIS B:372 , THR B:373
BINDING SITE FOR RESIDUE SO4 B 447
19
FC9
SOFTWARE
ARG B:368
BINDING SITE FOR RESIDUE SO4 B 448
20
GC1
SOFTWARE
ARG B:320 , SO4 B:444
BINDING SITE FOR RESIDUE SO4 B 449
21
GC2
SOFTWARE
ARG B:424
BINDING SITE FOR RESIDUE SO4 B 451
22
GC3
SOFTWARE
MET B:1 , ARG B:2 , LEU B:20
BINDING SITE FOR RESIDUE SO4 B 452
23
GC4
SOFTWARE
HIS B:323 , SO4 B:439 , HOH B:515
BINDING SITE FOR RESIDUE SO4 B 453
24
GC5
SOFTWARE
PRO B:262 , ASN B:281 , ARG B:284
BINDING SITE FOR RESIDUE SO4 B 454
25
GC6
SOFTWARE
LEU A:407 , LYS A:411 , HOH A:582 , LEU B:407 , LYS B:411
BINDING SITE FOR RESIDUE FLC B 455
26
GC7
SOFTWARE
VAL B:12 , THR B:188 , TYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , HIS B:380 , HIS B:400 , GLU B:402 , LYS B:405 , HOH B:462 , HOH B:500
BINDING SITE FOR RESIDUE U5P B 456
27
GC8
SOFTWARE
ARG B:2 , LEU B:20 , ARG B:25 , GLY B:46 , PHE B:47 , GLY B:426 , GLY B:428
BINDING SITE FOR RESIDUE U5P B 457
28
GC9
SOFTWARE
ASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , HOH B:462
BINDING SITE FOR RESIDUE ZN B 458
29
HC1
SOFTWARE
HIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , HOH B:462
BINDING SITE FOR RESIDUE ZN B 459
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iela_ (A:)
1b: SCOP_d3ielb_ (B:)
1c: SCOP_d3ielc_ (C:)
1d: SCOP_d3ield_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3iela_
A:
1b
d3ielb_
B:
1c
d3ielc_
C:
1d
d3ield_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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