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(-) Description

Title :  CRYSTAL STRUCTURE OF H380A MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH RNA
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  22 Jul 09  (Deposition) - 04 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of H380A Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
 
Molecule 2 - RNA (5'-R(P*UP*UP*UP*U)-3')
    Chains: E, F, G, H
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C   G 
Biological Unit 4 (1x):    D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 64)

Asymmetric Unit (3, 64)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO454Ligand/IonSULFATE ION
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO418Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 17)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO417Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO410Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 9)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO49Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (64, 64)

Asymmetric Unit (64, 64)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:192 , ARG A:195 , GLY A:375 , GLY A:376 , HOH A:458BINDING SITE FOR RESIDUE SO4 A 432
02AC2SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 433
03AC3SOFTWAREARG A:24 , ARG A:128 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 434
04AC4SOFTWAREFLC A:450BINDING SITE FOR RESIDUE SO4 A 435
05AC5SOFTWAREARG A:333BINDING SITE FOR RESIDUE SO4 A 436
06AC6SOFTWAREMET A:1 , ARG A:2BINDING SITE FOR RESIDUE SO4 A 437
07AC7SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270BINDING SITE FOR RESIDUE SO4 A 438
08AC8SOFTWARESER A:330 , PRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 439
09AC9SOFTWAREARG A:359 , GLY A:362BINDING SITE FOR RESIDUE SO4 A 440
10BC1SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 441
11BC2SOFTWAREHIS A:293 , ARG B:284BINDING SITE FOR RESIDUE SO4 A 442
12BC3SOFTWARELYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 443
13BC4SOFTWAREHIS A:293 , THR A:294 , GLU A:295 , GLY B:287BINDING SITE FOR RESIDUE SO4 A 444
14BC5SOFTWAREASN A:281 , ARG A:284 , FLC A:450 , HOH A:461BINDING SITE FOR RESIDUE SO4 A 445
15BC6SOFTWAREARG A:2 , GLU A:427 , GLY A:428BINDING SITE FOR RESIDUE SO4 A 446
16BC7SOFTWARETYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379BINDING SITE FOR RESIDUE SO4 A 447
17BC8SOFTWAREARG A:284 , VAL A:290 , FLC A:450 , GLU B:292BINDING SITE FOR RESIDUE SO4 A 448
18BC9SOFTWAREARG A:84 , LEU A:88 , ARG A:263BINDING SITE FOR RESIDUE SO4 A 449
19CC1SOFTWARESER A:259 , PRO A:262 , ARG A:284 , SO4 A:435 , SO4 A:445 , SO4 A:448BINDING SITE FOR RESIDUE FLC A 450
20CC2SOFTWARELEU A:407 , LYS A:411 , ALA A:414 , LEU B:407 , LYS B:411BINDING SITE FOR RESIDUE FLC A 451
21CC3SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:453 , U E:1BINDING SITE FOR RESIDUE ZN A 452
22CC4SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:452 , U E:1BINDING SITE FOR RESIDUE ZN A 453
23CC5SOFTWARELEU B:387BINDING SITE FOR RESIDUE SO4 B 432
24CC6SOFTWAREARG B:359 , GLY B:362BINDING SITE FOR RESIDUE SO4 B 433
25CC7SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 434
26CC8SOFTWAREARG B:24BINDING SITE FOR RESIDUE SO4 B 435
27CC9SOFTWAREARG B:284 , VAL B:290 , GLU B:292BINDING SITE FOR RESIDUE SO4 B 436
28DC1SOFTWARELEU A:415 , ARG B:424BINDING SITE FOR RESIDUE SO4 B 437
29DC2SOFTWAREPRO A:243 , ARG A:244BINDING SITE FOR RESIDUE SO4 B 438
30DC3SOFTWAREARG B:354BINDING SITE FOR RESIDUE SO4 B 439
31DC4SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 440
32DC5SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 441
33DC6SOFTWAREGLU B:292 , HIS B:293 , THR B:294 , ARG B:320 , U F:4BINDING SITE FOR RESIDUE SO4 B 442
34DC7SOFTWAREARG B:84 , ARG B:263BINDING SITE FOR RESIDUE SO4 B 443
35DC8SOFTWAREARG A:244 , LYS B:298 , HIS B:323 , LYS B:326 , HIS B:327BINDING SITE FOR RESIDUE SO4 B 444
36DC9SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 445
37EC1SOFTWAREARG B:2 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE SO4 B 446
38EC2SOFTWAREARG B:25 , PHE B:47 , ASP B:48 , GLU B:51BINDING SITE FOR RESIDUE SO4 B 447
39EC3SOFTWARETYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379BINDING SITE FOR RESIDUE SO4 B 448
40EC4SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:450 , U F:1BINDING SITE FOR RESIDUE ZN B 449
41EC5SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:449 , U F:1BINDING SITE FOR RESIDUE ZN B 450
42EC6SOFTWARETYR C:189 , ARG C:227 , TYR C:341 , SER C:378 , GLY C:379 , ALA C:380BINDING SITE FOR RESIDUE SO4 C 432
43EC7SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 433
44EC8SOFTWAREARG C:25BINDING SITE FOR RESIDUE SO4 C 434
45EC9SOFTWAREARG C:24 , LYS C:50BINDING SITE FOR RESIDUE SO4 C 435
46FC1SOFTWARESER C:251 , PRO C:252 , MET C:253BINDING SITE FOR RESIDUE SO4 C 436
47FC2SOFTWAREARG A:73 , ARG C:424BINDING SITE FOR RESIDUE SO4 C 437
48FC3SOFTWAREARG C:84 , ARG C:263BINDING SITE FOR RESIDUE SO4 C 438
49FC4SOFTWAREARG C:24 , ARG C:128 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 439
50FC5SOFTWAREARG C:2 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 440
51FC6SOFTWAREARG C:25 , PHE C:47 , ASP C:48BINDING SITE FOR RESIDUE SO4 C 441
52FC7SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:443 , U G:1BINDING SITE FOR RESIDUE ZN C 442
53FC8SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:442 , U G:1BINDING SITE FOR RESIDUE ZN C 443
54FC9SOFTWAREGLY D:35 , LYS D:36 , GLU D:38BINDING SITE FOR RESIDUE SO4 D 432
55GC1SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 433
56GC2SOFTWAREARG D:84 , ARG D:263BINDING SITE FOR RESIDUE SO4 D 434
57GC3SOFTWAREARG D:155BINDING SITE FOR RESIDUE SO4 D 435
58GC4SOFTWAREPRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 436
59GC5SOFTWAREARG D:2 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 437
60GC6SOFTWAREARG D:24 , ARG D:128 , LEU D:129 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 438
61GC7SOFTWARETYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379BINDING SITE FOR RESIDUE SO4 D 439
62GC8SOFTWAREMET D:1BINDING SITE FOR RESIDUE SO4 D 440
63GC9SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , ZN D:442 , U H:1BINDING SITE FOR RESIDUE ZN D 441
64HC1SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , ZN D:441 , U H:1BINDING SITE FOR RESIDUE ZN D 442

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IE1)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IE1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IE1)

(-) Exons   (0, 0)

(no "Exon" information available for 3IE1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie1a_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.......hhhhhhh.....hhhhh.eee..........hhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhhh...............eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eee.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie1 A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGAAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie1b_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........eeeee....eeeeee.......hhhhh...........eee....hhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhheee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhh.......eeee.......hhhhhhhhh..eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie1 B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGAAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie1c_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhh.eee......eee..eeee............eeeee..eeeee......................eee...........hhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh..hhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee..hhhhhhh.......eeeee..........hhhhhh.......eeee.......hhhhhhh....ee......ee.....ee........hhhhhhhhh...........hhhhhhhhhhhhhhh............ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie1 C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGAAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie1d_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhh.....hhhhh.eee..........hhhhhhhhh....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.eee......eee..eee.eee.......eee..ee..ee.ee.......................ee...........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee..hhhhhhhhhh...eeeee..........hhhhhhhhh....eeee.......hhhhhhhhh..eee....eee...eeee........hhhhhhhhh...........hhhhhhhhhhhhhh.............ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie1 D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGAAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
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Chain E from PDB  Type:RNA  Length:4
                                    
                 3ie1 E   1 UUUU   4


Chain F from PDB  Type:RNA  Length:4
                                    
                 3ie1 F   1 UUUU   4


Chain G from PDB  Type:RNA  Length:2
                                  
                 3ie1 G   1 UU   2


Chain H from PDB  Type:RNA  Length:4
                                    
                 3ie1 H   1 UUUU   4
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IE1)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  RNSE_THET8 | Q5SLP1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3idz 3ie0 3ie2 3iek 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONIE DERIVATIVE
3a4y H61A MUTANT
3idz S378Q MUTANT
3ie0 S378Y MUTANT
3ie2 H400V MUTANT
3iek NATIVE
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG RELATED ID: TTK003001672.5 RELATED DB: TARGETDB