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(-) Description

Title :  CRYSTAL STRUCTURE OF NATIVE TTHA0252 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date :  22 Jul 09  (Deposition) - 28 Jul 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 110)

Asymmetric Unit (3, 110)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO4100Ligand/IonSULFATE ION
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 29)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO428Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 32)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO431Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 23)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO423Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 18)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO418Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (110, 110)

Asymmetric Unit (110, 110)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREARG A:77 , HOH A:475BINDING SITE FOR RESIDUE SO4 A 432
002AC2SOFTWAREARG A:24BINDING SITE FOR RESIDUE SO4 A 433
003AC3SOFTWAREARG A:359 , ARG C:359 , GLU C:364BINDING SITE FOR RESIDUE SO4 A 434
004AC4SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 435
005AC5SOFTWAREARG A:73 , HOH A:492BINDING SITE FOR RESIDUE SO4 A 436
006AC6SOFTWAREHIS A:61 , ASP A:63 , HIS A:141 , ASP A:162 , HIS A:380 , HIS A:400 , ZN A:461 , ZN A:462BINDING SITE FOR RESIDUE SO4 A 437
007AC7SOFTWAREGLU A:199 , ARG A:202 , SER D:330BINDING SITE FOR RESIDUE SO4 A 438
008AC8SOFTWARESER A:330 , PRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 439
009AC9SOFTWAREVAL A:371 , HIS A:372 , THR A:373 , HOH A:553BINDING SITE FOR RESIDUE SO4 A 440
010BC1SOFTWAREARG A:24 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 441
011BC2SOFTWAREMET A:1 , ARG A:2 , HOH A:539BINDING SITE FOR RESIDUE SO4 A 442
012BC3SOFTWAREHIS A:61 , LEU A:142 , PHE A:223 , VAL A:225 , GLU A:226 , ARG A:227 , HOH A:593 , HOH A:649 , HOH A:676BINDING SITE FOR RESIDUE SO4 A 443
013BC4SOFTWAREARG A:77 , GLU A:113 , HIS A:117 , HOH A:475BINDING SITE FOR RESIDUE SO4 A 444
014BC5SOFTWARETHR A:294 , ARG A:320 , HOH A:694BINDING SITE FOR RESIDUE SO4 A 445
015BC6SOFTWAREPRO A:243 , ARG A:244 , ARG B:302BINDING SITE FOR RESIDUE SO4 A 446
016BC7SOFTWARETHR A:222 , PHE A:223 , SER A:313 , GLY A:314 , HOH A:574 , HOH A:629BINDING SITE FOR RESIDUE SO4 A 447
017BC8SOFTWAREARG A:359 , GLY A:362 , HOH A:665BINDING SITE FOR RESIDUE SO4 A 448
018BC9SOFTWARETYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379 , HOH A:642 , HOH A:648BINDING SITE FOR RESIDUE SO4 A 449
019CC1SOFTWAREALA A:131 , LEU D:179BINDING SITE FOR RESIDUE SO4 A 450
020CC2SOFTWAREARG A:84 , PRO A:120 , GLU A:122 , ARG A:266 , GLU D:270 , SO4 D:432BINDING SITE FOR RESIDUE SO4 A 451
021CC3SOFTWAREARG A:2 , GLY A:428 , HOH A:547BINDING SITE FOR RESIDUE SO4 A 452
022CC4SOFTWAREARG A:119BINDING SITE FOR RESIDUE SO4 A 453
023CC5SOFTWAREARG A:84 , LEU A:88 , ARG A:263BINDING SITE FOR RESIDUE SO4 A 454
024CC6SOFTWARELYS A:298 , HIS A:323 , LYS A:326 , HIS A:327 , HOH A:664BINDING SITE FOR RESIDUE SO4 A 455
025CC7SOFTWAREHIS A:293 , ARG B:284BINDING SITE FOR RESIDUE SO4 A 456
026CC8SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 457
027CC9SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , HOH A:532 , HOH A:637 , ARG D:84BINDING SITE FOR RESIDUE SO4 A 458
028DC1SOFTWAREPRO A:304 , ARG A:333 , HOH A:586 , HOH A:647BINDING SITE FOR RESIDUE SO4 A 459
029DC2SOFTWAREPRO A:262 , ASN A:281 , ARG A:284 , HOH A:599BINDING SITE FOR RESIDUE FLC A 460
030DC3SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , SO4 A:437 , ZN A:462BINDING SITE FOR RESIDUE ZN A 461
031DC4SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , SO4 A:437 , ZN A:461BINDING SITE FOR RESIDUE ZN A 462
032DC5SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 432
033DC6SOFTWAREPRO A:394 , ARG B:2 , PRO B:430BINDING SITE FOR RESIDUE SO4 B 433
034DC7SOFTWAREARG B:84 , ARG B:263 , HOH B:574 , HOH B:580BINDING SITE FOR RESIDUE SO4 B 434
035DC8SOFTWAREVAL B:371 , HIS B:372 , THR B:373 , HOH B:505BINDING SITE FOR RESIDUE SO4 B 435
036DC9SOFTWARELYS B:210 , SER B:370 , HIS B:372 , SO4 B:455BINDING SITE FOR RESIDUE SO4 B 436
037EC1SOFTWAREGLY B:318 , GLY B:319 , HOH B:564 , HOH B:650BINDING SITE FOR RESIDUE SO4 B 437
038EC2SOFTWAREHIS A:240 , ARG A:241 , HIS B:327 , SER B:330BINDING SITE FOR RESIDUE SO4 B 438
039EC3SOFTWAREARG B:256BINDING SITE FOR RESIDUE SO4 B 439
040EC4SOFTWAREGLU B:402 , GLU B:403 , GLU B:404 , HOH B:533BINDING SITE FOR RESIDUE SO4 B 440
041EC5SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 441
042EC6SOFTWAREARG B:25 , ASP B:48BINDING SITE FOR RESIDUE SO4 B 442
043EC7SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 443
044EC8SOFTWARETYR A:248 , GLU A:289 , ALA A:296 , HOH A:515 , HOH A:603 , TYR B:248 , GLU B:289 , VAL B:291 , ALA B:296 , HOH B:466 , HOH B:527BINDING SITE FOR RESIDUE SO4 B 444
045EC9SOFTWAREARG B:24BINDING SITE FOR RESIDUE SO4 B 445
046FC1SOFTWAREHIS B:61 , LEU B:142 , PHE B:223 , VAL B:225 , GLU B:226 , ARG B:227 , HOH B:566 , HOH B:590 , HOH B:647BINDING SITE FOR RESIDUE SO4 B 446
047FC2SOFTWAREGLU B:153BINDING SITE FOR RESIDUE SO4 B 447
048FC3SOFTWAREARG B:77 , GLU B:113 , HIS B:117BINDING SITE FOR RESIDUE SO4 B 448
049FC4SOFTWARELEU B:412 , HOH B:522 , HOH B:656BINDING SITE FOR RESIDUE SO4 B 449
050FC5SOFTWAREPRO B:304BINDING SITE FOR RESIDUE SO4 B 450
051FC6SOFTWAREARG B:359 , LEU B:361 , GLY B:362 , HOH B:578BINDING SITE FOR RESIDUE SO4 B 451
052FC7SOFTWAREARG A:244 , HIS B:323 , LYS B:326 , HIS B:327 , HOH B:624BINDING SITE FOR RESIDUE SO4 B 452
053FC8SOFTWAREMET B:1 , ARG B:2BINDING SITE FOR RESIDUE SO4 B 453
054FC9SOFTWAREALA B:9 , ARG B:10 , ARG B:424 , PHE B:425 , HOH B:601BINDING SITE FOR RESIDUE SO4 B 454
055GC1SOFTWAREARG B:354 , ALA B:369 , SER B:370 , VAL B:371 , SO4 B:436BINDING SITE FOR RESIDUE SO4 B 455
056GC2SOFTWARETYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , HOH B:568BINDING SITE FOR RESIDUE SO4 B 456
057GC3SOFTWAREPHE B:223 , GLY B:312 , SER B:313 , GLY B:314 , HOH B:632BINDING SITE FOR RESIDUE SO4 B 457
058GC4SOFTWAREGLU B:199 , ARG B:202BINDING SITE FOR RESIDUE SO4 B 458
059GC5SOFTWAREHIS B:61 , ASP B:63 , HIS B:141 , ASP B:162 , HIS B:380 , HIS B:400 , ZN B:464 , ZN B:465BINDING SITE FOR RESIDUE SO4 B 459
060GC6SOFTWAREARG A:155 , ARG B:155 , HOH B:555BINDING SITE FOR RESIDUE SO4 B 460
061GC7SOFTWAREARG B:2 , GLY B:426 , GLY B:428 , HOH B:630BINDING SITE FOR RESIDUE SO4 B 461
062GC8SOFTWAREARG A:155 , ARG B:155 , HOH B:584BINDING SITE FOR RESIDUE SO4 B 462
063GC9SOFTWARELEU A:407 , GLY A:410 , LYS A:411 , ALA A:414 , LEU B:407 , GLY B:410 , LYS B:411 , VAL B:420 , HOH B:598BINDING SITE FOR RESIDUE FLC B 463
064HC1SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , SO4 B:459 , ZN B:465BINDING SITE FOR RESIDUE ZN B 464
065HC2SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , SO4 B:459 , ZN B:464BINDING SITE FOR RESIDUE ZN B 465
066HC3SOFTWAREASP C:96 , VAL C:100 , PRO C:252 , MET C:253 , ARG C:256BINDING SITE FOR RESIDUE SO4 C 432
067HC4SOFTWAREARG C:24 , LEU C:129 , GLY C:130 , HOH C:466BINDING SITE FOR RESIDUE SO4 C 433
068HC5SOFTWAREHIS C:61 , LEU C:142 , PHE C:223 , VAL C:225 , GLU C:226 , ARG C:227 , HOH C:477BINDING SITE FOR RESIDUE SO4 C 434
069HC6SOFTWAREARG A:73 , ARG C:424BINDING SITE FOR RESIDUE SO4 C 435
070HC7SOFTWAREARG C:2 , PRO C:430BINDING SITE FOR RESIDUE SO4 C 436
071HC8SOFTWAREVAL C:371 , HIS C:372 , THR C:373BINDING SITE FOR RESIDUE SO4 C 437
072HC9SOFTWAREPHE C:47 , ASP C:48 , HOH C:486 , HOH C:539BINDING SITE FOR RESIDUE SO4 C 438
073IC1SOFTWAREARG C:24 , HOH C:485BINDING SITE FOR RESIDUE SO4 C 439
074IC2SOFTWAREARG C:302BINDING SITE FOR RESIDUE SO4 C 440
075IC3SOFTWAREGLU C:292 , HIS C:293BINDING SITE FOR RESIDUE SO4 C 441
076IC4SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 442
077IC5SOFTWAREARG C:84 , ARG C:263 , HOH C:489BINDING SITE FOR RESIDUE SO4 C 443
078IC6SOFTWAREARG C:155BINDING SITE FOR RESIDUE SO4 C 444
079IC7SOFTWARELYS C:298 , ASN C:301 , HIS C:323 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 445
080IC8SOFTWARELYS C:36BINDING SITE FOR RESIDUE SO4 C 446
081IC9SOFTWAREARG C:2 , GLY C:426 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 447
082JC1SOFTWARETRP B:126 , VAL B:149 , GLN B:151 , THR B:156 , TRP C:126 , VAL C:149 , GLN C:151 , HOH C:482 , HOH C:498BINDING SITE FOR RESIDUE SO4 C 448
083JC2SOFTWARETYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , HOH C:515BINDING SITE FOR RESIDUE SO4 C 449
084JC3SOFTWAREGLY A:46 , PHE A:47 , HOH A:675 , GLY C:46 , PHE C:47 , SO4 C:454BINDING SITE FOR RESIDUE SO4 C 450
085JC4SOFTWAREARG C:77 , HOH C:565BINDING SITE FOR RESIDUE SO4 C 451
086JC5SOFTWAREGLU C:113 , HIS C:117 , HOH C:565BINDING SITE FOR RESIDUE SO4 C 452
087JC6SOFTWARESER C:330 , PRO C:366 , ARG C:368BINDING SITE FOR RESIDUE SO4 C 453
088JC7SOFTWAREPRO C:44 , PHE C:45 , GLY C:46 , PHE C:47 , GLU C:74 , SO4 C:450BINDING SITE FOR RESIDUE SO4 C 454
089JC8SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:456BINDING SITE FOR RESIDUE ZN C 455
090JC9SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:455BINDING SITE FOR RESIDUE ZN C 456
091KC1SOFTWARESO4 A:451 , PRO D:172 , ASP D:173 , SER D:269 , GLU D:270 , HOH D:491BINDING SITE FOR RESIDUE SO4 D 432
092KC2SOFTWAREARG D:119 , PRO D:120BINDING SITE FOR RESIDUE SO4 D 433
093KC3SOFTWAREARG D:77 , GLU D:113BINDING SITE FOR RESIDUE SO4 D 434
094KC4SOFTWAREMET D:1 , ARG D:2BINDING SITE FOR RESIDUE SO4 D 435
095KC5SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 436
096KC6SOFTWAREPRO D:44 , PHE D:45 , GLY D:46 , PHE D:47 , PRO D:49 , GLU D:74 , HOH D:485BINDING SITE FOR RESIDUE SO4 D 437
097KC7SOFTWAREARG D:24 , LEU D:129 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 438
098KC8SOFTWAREGLU D:292 , HIS D:293 , ALA D:296BINDING SITE FOR RESIDUE SO4 D 439
099KC9SOFTWAREHIS D:372 , THR D:373BINDING SITE FOR RESIDUE SO4 D 440
100LC1SOFTWAREHIS D:61 , ASP D:63 , ASP D:162 , HIS D:380 , HIS D:400 , ZN D:450 , ZN D:451BINDING SITE FOR RESIDUE SO4 D 441
101LC2SOFTWAREHIS C:327 , LYS D:411BINDING SITE FOR RESIDUE SO4 D 442
102LC3SOFTWARETYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379BINDING SITE FOR RESIDUE SO4 D 443
103LC4SOFTWARELYS D:298 , ASN D:301 , HIS D:323 , HIS D:327BINDING SITE FOR RESIDUE SO4 D 444
104LC5SOFTWAREASN D:281BINDING SITE FOR RESIDUE SO4 D 445
105LC6SOFTWAREARG D:2 , GLU D:427 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 446
106LC7SOFTWAREHIS D:61 , LEU D:142 , PHE D:223 , VAL D:225 , GLU D:226 , ARG D:227BINDING SITE FOR RESIDUE SO4 D 447
107LC8SOFTWAREARG D:77 , GLU D:113 , HIS D:117BINDING SITE FOR RESIDUE SO4 D 448
108LC9SOFTWAREARG D:155BINDING SITE FOR RESIDUE SO4 D 449
109MC1SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , SO4 D:441 , ZN D:451BINDING SITE FOR RESIDUE ZN D 450
110MC2SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , SO4 D:441 , ZN D:450BINDING SITE FOR RESIDUE ZN D 451

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IEK)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IEK)

(-) Exons   (0, 0)

(no "Exon" information available for 3IEK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ieka_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iek A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3iekb_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iek B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3iekc_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhh.......eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhh...eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iek C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3iekd_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhhhhhhh...eeeee........hhhhhh.........eeee.......hhhhhhhh..................ee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iek D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IEK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IEK)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3iek
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  RNSE_THET8 | Q5SLP1
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  3.1.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3idz 3ie0 3ie1 3ie2 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONINE DERIVATIVE
3a4y H61A MUTANT
3idz S378Q MUTANT
3ie0 S378Y MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3ie2 H400V MUTANT
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG