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(-) Description

Title :  CRYSTAL STRUCTURE OF H61A MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  22 Jul 09  (Deposition) - 04 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of H61A Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 63)

Asymmetric Unit (3, 63)
No.NameCountTypeFull Name
1FLC3Ligand/IonCITRATE ANION
2SO456Ligand/IonSULFATE ION
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO419Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO415Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO413Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 9)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO49Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (60, 60)

Asymmetric Unit (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:84 , LEU A:88 , ARG A:263 , GLU D:270BINDING SITE FOR RESIDUE SO4 A 432
02AC2SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270BINDING SITE FOR RESIDUE SO4 A 433
03AC3SOFTWAREGLU A:199 , ARG A:202 , HOH A:498BINDING SITE FOR RESIDUE SO4 A 434
04AC4SOFTWARETYR A:189 , PHE A:223 , ARG A:227 , SER A:378 , GLY A:379BINDING SITE FOR RESIDUE SO4 A 435
05AC5SOFTWAREARG A:284 , VAL A:290BINDING SITE FOR RESIDUE SO4 A 436
06AC6SOFTWAREARG A:354BINDING SITE FOR RESIDUE SO4 A 437
07AC7SOFTWAREARG A:24BINDING SITE FOR RESIDUE SO4 A 438
08AC8SOFTWAREPRO A:243 , ARG A:244 , ARG B:302BINDING SITE FOR RESIDUE SO4 A 439
09AC9SOFTWAREMET A:1 , ARG A:2BINDING SITE FOR RESIDUE SO4 A 440
10BC1SOFTWAREGLY A:318 , GLY A:319 , HOH A:454BINDING SITE FOR RESIDUE SO4 A 441
11BC2SOFTWAREARG A:2 , GLY A:426 , GLY A:428BINDING SITE FOR RESIDUE SO4 A 442
12BC3SOFTWARETHR A:222 , PHE A:223 , ALA A:224 , GLY A:314BINDING SITE FOR RESIDUE SO4 A 443
13BC4SOFTWARELYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 444
14BC5SOFTWAREARG A:359 , GLY A:362 , ARG C:359BINDING SITE FOR RESIDUE SO4 A 445
15BC6SOFTWAREARG A:24 , ARG A:128 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 446
16BC7SOFTWAREHIS A:293 , ARG B:284BINDING SITE FOR RESIDUE SO4 A 448
17BC8SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , HOH A:479 , HOH A:499 , PRO B:366 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 449
18BC9SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 450
19CC1SOFTWARELYS A:280 , ASN A:281 , ARG A:284 , HIS B:293BINDING SITE FOR RESIDUE FLC A 451
20CC2SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400BINDING SITE FOR RESIDUE ZN A 452
21CC3SOFTWAREARG B:84 , ARG B:263 , HOH B:452BINDING SITE FOR RESIDUE SO4 B 433
22CC4SOFTWAREPRO B:243 , ARG B:244BINDING SITE FOR RESIDUE SO4 B 434
23CC5SOFTWAREARG B:354BINDING SITE FOR RESIDUE SO4 B 435
24CC6SOFTWAREHIS B:293 , THR B:294 , ARG B:320BINDING SITE FOR RESIDUE SO4 B 436
25CC7SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 437
26CC8SOFTWAREARG A:244 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327BINDING SITE FOR RESIDUE SO4 B 439
27CC9SOFTWARETHR B:222 , PHE B:223 , ALA B:224 , GLY B:314 , HOH B:458BINDING SITE FOR RESIDUE SO4 B 440
28DC1SOFTWAREARG B:359 , GLY B:362BINDING SITE FOR RESIDUE SO4 B 441
29DC2SOFTWAREARG B:2 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE SO4 B 442
30DC3SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 443
31DC4SOFTWARETYR B:189 , ARG B:227 , SER B:378 , GLY B:379 , HIS B:380BINDING SITE FOR RESIDUE SO4 B 444
32DC5SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 445
33DC6SOFTWAREARG B:284 , VAL B:290 , HOH B:497BINDING SITE FOR RESIDUE SO4 B 446
34DC7SOFTWARELEU A:407 , LYS A:411 , LEU B:407 , LYS B:411BINDING SITE FOR RESIDUE FLC B 447
35DC8SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400BINDING SITE FOR RESIDUE ZN B 448
36DC9SOFTWAREARG C:24 , LYS C:50BINDING SITE FOR RESIDUE SO4 C 432
37EC1SOFTWAREARG C:155BINDING SITE FOR RESIDUE SO4 C 433
38EC2SOFTWAREARG C:77 , GLU C:113 , HIS C:117BINDING SITE FOR RESIDUE SO4 C 434
39EC3SOFTWARETYR C:189 , ARG C:227 , TYR C:341 , SER C:378 , GLY C:379 , HIS C:380BINDING SITE FOR RESIDUE SO4 C 435
40EC4SOFTWAREPHE C:223 , ALA C:224 , SER C:313 , GLY C:314BINDING SITE FOR RESIDUE SO4 C 436
41EC5SOFTWARELYS C:99 , PRO C:252 , ARG C:256BINDING SITE FOR RESIDUE SO4 C 437
42EC6SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 438
43EC7SOFTWAREARG C:2 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 439
44EC8SOFTWAREARG C:84BINDING SITE FOR RESIDUE SO4 C 440
45EC9SOFTWAREHIS C:327 , LYS D:411BINDING SITE FOR RESIDUE SO4 C 441
46FC1SOFTWAREARG C:24 , ARG C:128 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 442
47FC2SOFTWAREARG C:84 , LEU C:88 , ARG C:263 , HOH C:458BINDING SITE FOR RESIDUE SO4 C 443
48FC3SOFTWARELYS C:298 , ASN C:301 , HIS C:323 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 444
49FC4SOFTWAREARG C:10 , GLU C:403 , ARG C:424BINDING SITE FOR RESIDUE FLC C 445
50FC5SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400BINDING SITE FOR RESIDUE ZN C 446
51FC6SOFTWARELYS D:298 , ASN D:301 , HIS D:323 , LYS D:326 , HIS D:327BINDING SITE FOR RESIDUE SO4 D 432
52FC7SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 433
53FC8SOFTWAREARG D:2 , GLY D:426 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 434
54FC9SOFTWAREMET D:1 , ARG D:2BINDING SITE FOR RESIDUE SO4 D 435
55GC1SOFTWAREARG D:24 , ARG D:128 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 436
56GC2SOFTWAREARG A:84 , PRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 437
57GC3SOFTWARETHR D:222 , PHE D:223 , ALA D:224 , SER D:313 , GLY D:314BINDING SITE FOR RESIDUE SO4 D 438
58GC4SOFTWAREVAL D:290 , VAL D:291 , GLU D:292 , ALA D:296BINDING SITE FOR RESIDUE SO4 D 439
59GC5SOFTWARETYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379 , HIS D:380BINDING SITE FOR RESIDUE SO4 D 440
60GC6SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400BINDING SITE FOR RESIDUE ZN D 441

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A4Y)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A4Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A4Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3A4Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3a4ya_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhh.....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a4y A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAALDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3a4yb_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhh...........eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee........hhhhhhhhhh.....eeee.......hhhhhhhhh..eee....eee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a4y B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAALDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3a4yc_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee......eee..eeeeeee.......eeeeeee..eeeee......................eeee..........hhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh...........eee.hhhhhhh.......eeeee........hhhhhhhhhh.....eeee.......hhhhhhhhh..eee....eee...eeee.hhhh...hhhhhhhhh......ee...hhhhhhhhhhhhhh.............ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a4y C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAALDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3a4yd_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhh.....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee...hhhhhhh.......eeee.........hhhhhhh.......eeee.......hhhhhhhhh..eee....eee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a4y D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAALDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3A4Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A4Y)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3a4y
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  RNSE_THET8 | Q5SLP1
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  3.1.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3idz 3ie0 3ie1 3ie2 3iek 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONINE DERIVATIVE
3idz S378Q MUTANT
3ie0 S378Y MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3ie2 H400V MUTANT
3iek NATIVE
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG RELATED ID: TTK003001672.6 RELATED DB: TARGETDB