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(-) Description

Title :  CRYSTAL STRUCTURE OF S378Y MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  22 Jul 09  (Deposition) - 04 Aug 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of S378Y Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE TTHA0252
    Chains: A, B, C, D
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTHA0252
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 78)

Asymmetric Unit (3, 78)
No.NameCountTypeFull Name
1FLC3Ligand/IonCITRATE ANION
2SO467Ligand/IonSULFATE ION
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 22)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
2SO420Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2SO419Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 19)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO419Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 9)
No.NameCountTypeFull Name
1FLC-1Ligand/IonCITRATE ANION
2SO49Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (76, 76)

Asymmetric Unit (76, 76)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:24 , LEU A:129 , GLY A:130BINDING SITE FOR RESIDUE SO4 A 432
02AC2SOFTWAREPRO A:304BINDING SITE FOR RESIDUE SO4 A 433
03AC3SOFTWAREARG A:24BINDING SITE FOR RESIDUE SO4 A 434
04AC4SOFTWAREARG A:359 , GLY A:362 , ARG C:359BINDING SITE FOR RESIDUE SO4 A 435
05AC5SOFTWAREARG A:368BINDING SITE FOR RESIDUE SO4 A 436
06AC6SOFTWAREARG A:84 , ARG A:263BINDING SITE FOR RESIDUE SO4 A 437
07AC7SOFTWAREGLN A:34 , HIS A:61 , LEU A:62 , ASP A:63BINDING SITE FOR RESIDUE SO4 A 438
08AC8SOFTWAREPHE A:223 , ALA A:224 , SER A:313 , GLY A:314 , HOH A:473BINDING SITE FOR RESIDUE SO4 A 439
09AC9SOFTWARELYS A:298 , ASN A:301 , ARG A:302 , HIS A:323 , LYS A:326 , HIS A:327BINDING SITE FOR RESIDUE SO4 A 440
10BC1SOFTWAREHIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368BINDING SITE FOR RESIDUE SO4 A 441
11BC2SOFTWAREARG A:192 , ARG A:195 , GLY A:375BINDING SITE FOR RESIDUE SO4 A 442
12BC3SOFTWAREARG A:2 , GLY A:426 , GLY A:428BINDING SITE FOR RESIDUE SO4 A 443
13BC4SOFTWAREPRO A:366 , ARG A:368BINDING SITE FOR RESIDUE SO4 A 444
14BC5SOFTWAREPRO A:243 , ARG A:244BINDING SITE FOR RESIDUE SO4 A 445
15BC6SOFTWAREARG A:73 , ARG C:424BINDING SITE FOR RESIDUE SO4 A 446
16BC7SOFTWAREHIS A:293BINDING SITE FOR RESIDUE SO4 A 447
17BC8SOFTWAREGLY A:140 , HIS A:141 , GLY A:164 , ASN A:165 , LYS A:168 , LEU A:171 , GLU A:226 , GLY A:379 , HOH A:472BINDING SITE FOR RESIDUE SO4 A 448
18BC9SOFTWARETYR A:189 , PHE A:223 , ARG A:227 , GLY A:340 , TYR A:341 , TYR A:378 , GLY A:379BINDING SITE FOR RESIDUE SO4 A 449
19CC1SOFTWARELYS A:99 , PRO A:252 , ARG A:256 , FLC A:453 , HOH A:467BINDING SITE FOR RESIDUE SO4 A 450
20CC2SOFTWAREPRO A:172 , ASP A:173 , SER A:269 , GLU A:270BINDING SITE FOR RESIDUE SO4 A 451
21CC3SOFTWARELYS A:280 , ASN A:281 , ARG A:284 , HOH A:474 , HIS B:293BINDING SITE FOR RESIDUE FLC A 452
22CC4SOFTWARETHR A:294 , ARG A:320 , SO4 A:450 , HOH A:467BINDING SITE FOR RESIDUE FLC A 453
23CC5SOFTWAREASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:455BINDING SITE FOR RESIDUE ZN A 454
24CC6SOFTWAREHIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:454BINDING SITE FOR RESIDUE ZN A 455
25CC7SOFTWAREARG B:24 , LEU B:129 , GLY B:130BINDING SITE FOR RESIDUE SO4 B 432
26CC8SOFTWAREGLN B:391 , ARG B:416BINDING SITE FOR RESIDUE SO4 B 433
27CC9SOFTWARELEU A:415 , ARG B:10 , ARG B:424BINDING SITE FOR RESIDUE SO4 B 434
28DC1SOFTWAREARG B:84 , ARG B:263BINDING SITE FOR RESIDUE SO4 B 435
29DC2SOFTWAREARG B:192 , ARG B:195BINDING SITE FOR RESIDUE SO4 B 436
30DC3SOFTWAREGLU A:289 , VAL A:290 , GLU A:292 , GLU B:289 , VAL B:290 , GLU B:292BINDING SITE FOR RESIDUE SO4 B 437
31DC4SOFTWAREARG B:354BINDING SITE FOR RESIDUE SO4 B 438
32DC5SOFTWARETYR B:189 , PHE B:223 , ARG B:227 , GLY B:340 , TYR B:341 , TYR B:378 , GLY B:379BINDING SITE FOR RESIDUE SO4 B 439
33DC6SOFTWAREARG A:244 , LYS B:298 , HIS B:323 , LYS B:326 , HIS B:327BINDING SITE FOR RESIDUE SO4 B 440
34DC7SOFTWAREGLU B:292 , HIS B:293 , THR B:294 , ARG B:320BINDING SITE FOR RESIDUE SO4 B 441
35DC8SOFTWAREARG A:155 , VAL A:431 , ARG B:155 , HOH B:474BINDING SITE FOR RESIDUE SO4 B 442
36DC9SOFTWAREPRO B:172 , ASP B:173 , SER B:269 , GLU B:270BINDING SITE FOR RESIDUE SO4 B 443
37EC1SOFTWAREARG B:368BINDING SITE FOR RESIDUE SO4 B 444
38EC2SOFTWAREARG B:24BINDING SITE FOR RESIDUE SO4 B 445
39EC3SOFTWAREPRO A:394 , PRO B:430BINDING SITE FOR RESIDUE SO4 B 446
40EC4SOFTWAREPHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:473BINDING SITE FOR RESIDUE SO4 B 447
41EC5SOFTWARELEU B:387 , LEU B:412BINDING SITE FOR RESIDUE SO4 B 448
42EC6SOFTWAREARG B:2 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE SO4 B 449
43EC7SOFTWARELEU A:407 , LYS A:411 , LEU B:407 , LYS B:411 , ALA B:414BINDING SITE FOR RESIDUE FLC B 451
44EC8SOFTWAREASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:453BINDING SITE FOR RESIDUE ZN B 452
45EC9SOFTWAREHIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:452BINDING SITE FOR RESIDUE ZN B 453
46FC1SOFTWAREMET C:1 , ARG C:2BINDING SITE FOR RESIDUE SO4 C 432
47FC2SOFTWARELYS C:99 , PRO C:252 , MET C:253 , ARG C:256BINDING SITE FOR RESIDUE SO4 C 434
48FC3SOFTWAREARG C:24 , LEU C:129 , GLY C:130BINDING SITE FOR RESIDUE SO4 C 435
49FC4SOFTWARETHR C:222 , PHE C:223 , ALA C:224 , MET C:253 , SER C:313BINDING SITE FOR RESIDUE SO4 C 436
50FC5SOFTWAREASP C:48BINDING SITE FOR RESIDUE SO4 C 437
51FC6SOFTWAREARG C:424BINDING SITE FOR RESIDUE SO4 C 438
52FC7SOFTWAREARG C:2 , GLY C:428BINDING SITE FOR RESIDUE SO4 C 439
53FC8SOFTWARETYR C:189 , PHE C:223 , ARG C:227 , TYR C:341 , TYR C:378 , GLY C:379BINDING SITE FOR RESIDUE SO4 C 440
54FC9SOFTWAREGLY C:78 , PRO C:79 , HIS C:117 , ARG C:119BINDING SITE FOR RESIDUE SO4 C 441
55GC1SOFTWAREARG C:10 , ARG C:424BINDING SITE FOR RESIDUE SO4 C 442
56GC2SOFTWAREARG C:24 , LYS C:50BINDING SITE FOR RESIDUE SO4 C 443
57GC3SOFTWAREGLY C:23 , ARG C:25BINDING SITE FOR RESIDUE SO4 C 444
58GC4SOFTWAREARG C:359BINDING SITE FOR RESIDUE SO4 C 445
59GC5SOFTWARELYS C:298 , ASN C:301 , HIS C:327BINDING SITE FOR RESIDUE SO4 C 446
60GC6SOFTWAREARG C:284 , VAL C:290BINDING SITE FOR RESIDUE SO4 C 447
61GC7SOFTWAREPRO C:172 , ASP C:173 , SER C:269 , GLU C:270BINDING SITE FOR RESIDUE SO4 C 448
62GC8SOFTWAREARG C:84 , ARG C:263BINDING SITE FOR RESIDUE SO4 C 449
63GC9SOFTWAREARG C:77 , HIS C:117BINDING SITE FOR RESIDUE SO4 C 450
64HC1SOFTWAREASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:452BINDING SITE FOR RESIDUE ZN C 451
65HC2SOFTWAREHIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:451BINDING SITE FOR RESIDUE ZN C 452
66HC3SOFTWAREPRO D:172 , ASP D:173 , SER D:269 , GLU D:270BINDING SITE FOR RESIDUE SO4 D 432
67HC4SOFTWAREVAL D:291 , GLU D:292 , HIS D:293 , ALA D:296BINDING SITE FOR RESIDUE SO4 D 433
68HC5SOFTWARETHR D:222 , PHE D:223 , ALA D:224 , GLY D:312 , SER D:313 , GLY D:314BINDING SITE FOR RESIDUE SO4 D 434
69HC6SOFTWAREMET D:1 , ARG D:2BINDING SITE FOR RESIDUE SO4 D 435
70HC7SOFTWARELYS D:298 , LYS D:326 , HIS D:327BINDING SITE FOR RESIDUE SO4 D 436
71HC8SOFTWAREARG D:24BINDING SITE FOR RESIDUE SO4 D 437
72HC9SOFTWAREARG D:2 , LYS D:50 , GLY D:426 , GLY D:428BINDING SITE FOR RESIDUE SO4 D 438
73IC1SOFTWAREARG D:24 , ARG D:128 , LEU D:129 , GLY D:130BINDING SITE FOR RESIDUE SO4 D 439
74IC2SOFTWARETYR D:189 , ARG D:227 , TYR D:341 , TYR D:378 , GLY D:379 , HIS D:380BINDING SITE FOR RESIDUE SO4 D 440
75IC3SOFTWAREASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , ZN D:442BINDING SITE FOR RESIDUE ZN D 441
76IC4SOFTWAREHIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , HIS D:380 , ZN D:441BINDING SITE FOR RESIDUE ZN D 442

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IE0)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:312 -Ser A:313
3Gly B:305 -Pro B:306
4Gly B:312 -Ser B:313
5Gly C:305 -Pro C:306
6Gly C:312 -Ser C:313
7Gly D:305 -Pro D:306
8Gly D:312 -Ser D:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IE0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IE0)

(-) Exons   (0, 0)

(no "Exon" information available for 3IE0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie0a_ A: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.......hhhhhhh.....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhh.....eeee.......hhhhhhhh...eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie0 A   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFYGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain B from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie0b_ B: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee........hhhhhhh..........eee....hhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhheee......eee..eeeeeee.......eeeeeee..eeeee......................eeeee.........hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee...hhhhhhhhhhh...eeeee........hhhhhhhhhh.....eeee.......hhhhhhhhh..eeee..eeee...eeee.hhhh...hhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie0 B   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFYGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain C from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie0c_ C: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee.....hhhhhhhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee.....eeee..eeeeeee.......eeeeeee..eeeee......................eeee..........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhh.......eeeee........hhhhhhhhh......eeee.......hhhhhhhhh..eee....eee...eeee........hhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie0 C   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFYGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 


Chain D from PDB  Type:PROTEIN  Length:431
 aligned with RNSE_THET8 | Q5SLP1 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
           RNSE_THET8     1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
               SCOP domains d3ie0d_ D: Putative RNA-degradation protein TTHA0252                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eeeee..eeeee..........hhhhh....hhhhh.eee....hhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhh.eee......eee..eee.eee.......eee..ee..eeeee......................eee...........hhhhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhh.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhhhhh......eeee.........hhhhhhh.......eeee.......hhhhhhh....eee....eee...eeee........hhhhhhhhh....eeee...hhhhhhhhhhhhhhh..eeee......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ie0 D   1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFYGHAGQDELLDWLQGEPRVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IE0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IE0)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RNSE_THET8 | Q5SLP1)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNSE_THET8 | Q5SLP1: 2dkf 3a4y 3idz 3ie1 3ie2 3iek 3iel 3iem

(-) Related Entries Specified in the PDB File

2dkf SELENOMETHIONINE DERIVATIVE
3a4y H61A MUTANT
3idz S378Q MUTANT
3ie1 H380A MUTANT COMPLEXED WITH RNA
3ie2 H400V MUTANT
3iek NATIVE
3iel COMPLEXED WITH UMP
3iem COMPLEXED WITH RNA ANALOG RELATED ID: TTK003001672.3 RELATED DB: TARGETDB