Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5c - Page 2:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the goodness of fit sigma2(single-kink line) (s(2)).

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Number of structures: 59 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1drr	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.104		16			6	4
						circular line	0.110	60
1d96	ahj015	E   |    H   |    B	10	nuc	diff	single-kink line	0.105		22			4	6
						circular line	0.300	44
1bpy	pde0125	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.106		11			3	7
						circular line	0.178	125
						straight line	0.281
1eel	dd0025	E   |    H   |    B	12	nuc	diff	single-kink line	0.107		8			3	8
						circular line	0.142	226
						straight line	0.213
1dnh	gdl002	E   |    H   |    B	12	nuc	diff	single-kink line	0.108		10			5	7
						circular line	0.132	130
1jk2	pd0231	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.110		8			5	5
						circular line	0.113	134
						straight line	0.212
1a1g	pdt056	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.111		8			6	4
						circular line	0.112	132
						straight line	0.208
260d	adj075	E   |    H   |    B	10	nuc	diff	single-kink line	0.111		18			5	5
						circular line	0.179	48
1vkx	pdr033	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.113		9			7	4
						circular line	0.175	172
						straight line	0.253
1afz	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.116		5			5	6
						circular line	0.124	239
						straight line	0.143
1hg9	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.117		14			4	5
						circular line	0.136	58
1a66	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.118		11			3	9
						circular line	0.169	181
						straight line	0.300
1yui	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.118		15			5	6
						circular line	0.138	84
471d	ar0018	E   |    H   |    B	12	nuc	diff	single-kink line	0.121		8			7	5
						circular line	0.152	146
						straight line	0.183
1jxl	pd0252	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.123		10			5	7
						circular line	0.133	122
1d85	gdlb17	E   |    H   |    B	12	nuc	diff	single-kink line	0.126		10			6	6
						circular line	0.158	128
1l5u	pd0304	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.127		10			5	6
						circular line	0.158	116
1dno	ah0007	E   |    H   |    B	10	nuc	diff	single-kink line	0.128		19			3	7
						circular line	0.235	54
197d	adh059	E   |    H   |    B	8	nuc	diff	single-kink line	0.129		16			5	3
						circular line	0.160	52
						straight line	0.235
1flo	pd0178	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.129		21			5	7
						circular line	0.281	62
4bdp	pde0133	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.131		14			5	6
						circular line	0.204	80
370d	adh0104	E   |    H   |    B	8	nuc	diff	single-kink line	0.137		13			5	3
						circular line	0.158	66
						straight line	0.231
1llm	pd0312	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.138		14			6	6
						circular line	0.143	86
1d9r	bd0025	E   |    H   |    B	10	nuc	diff	single-kink line	0.140		26			5	5
						circular line	0.339	41
412d	ah0004	E   |    H   |    B	10	nuc	diff	single-kink line	0.141		28			4	6
						circular line	0.246	32
1ofx	ahj040	E   |    H   |    B	10	nuc	diff	single-kink line	0.144		25			4	6
						circular line	0.224	36
1skp	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.144		15			6	5
						circular line	0.199	64
218d	bdlb58	E   |    H   |    B	12	nuc	diff	single-kink line	0.145		21			5	7
						circular line	0.187	61
1oka	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.146		16			5	4
						circular line	0.147	52
1d9h	ah0006	E   |    H   |    B	10	nuc	diff	single-kink line	0.148		30			4	6
						circular line	0.306	29
411d	ah0003	E   |    H   |    B	10	nuc	diff	single-kink line	0.148		26			4	6
						circular line	0.256	35
130d	gdlb20	E   |    H   |    B	12	nuc	diff	single-kink line	0.149		10			5	6
						circular line	0.210	124
1cvx	dd0020	E   |    H   |    B	10	nuc	diff	single-kink line	0.150		8			4	6
						circular line	0.169	136
						straight line	0.272
1m6x	pd0336	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.153		19			5	7
						circular line	0.272	66
1n3f	pd0361	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.154		11			4	6
						circular line	0.223	112
1p4e	pd0425	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.159		20			5	7
						circular line	0.342	66
1l3u	pd0302	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.166		9			4	7
						circular line	0.179	138
						straight line	0.300
1a1j	pdt060	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.170		14			6	4
						circular line	0.206	73
1le9	pd0309	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.171		10			5	6
						circular line	0.200	115
222d	ahj068	E   |    H   |    B	10	nuc	diff	single-kink line	0.171		24			4	6
						circular line	0.274	38
1g9z	pd0190	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.172		20			6	4
						circular line	0.263	54
1qxb	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.173		13			6	6
						circular line	0.188	87
226d	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.174		10			4	6
						circular line	0.190	124
						straight line	0.290
1lu5	dd0050	E   |    H   |    B	12	nuc	diff	single-kink line	0.175		27			6	6
						circular line	0.184	39
1dcv	bd0028	E   |    H   |    B	10	nuc	diff	single-kink line	0.178		12			5	5
						circular line	0.210	85
408d	bdd003	E   |    H   |    B	10	nuc	diff	single-kink line	0.188		7			5	5
						circular line	0.208	156
						straight line	0.261
1ttd	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.190		23			6	6
						circular line	0.292	56
1d56	bdj036	E   |    H   |    B	10	nuc	diff	single-kink line	0.191		9			5	5
						circular line	0.192	117
						straight line	0.335
1d57	bdj037	E   |    H   |    B	10	nuc	diff	single-kink line	0.197		8			5	5
						circular line	0.204	129
						straight line	0.307
1njx	pd0373	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.205		14			5	6
						circular line	0.281	83
1lcc	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.207		22			6	5
						circular line	0.216	47
1nk7	pd0380	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.207		14			7	2
						straight line	0.250
						circular line	0.255	127
1ijw	pd0213	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.208		13			4	7
						circular line	0.225	97
1ql5	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.208		12			6	4
						circular line	0.228	96
1zaa	pdt006	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.208		9			5	4
						circular line	0.211	121
						straight line	0.309
1ndn	bdl032	E   |    H   |    B	12	nuc	diff	single-kink line	0.212		9			4	8
						circular line	0.278	216
						straight line	0.321
1pib	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.212		11			2	7
						straight line	0.229
						circular line	0.262	200
1bw7	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.214		8			4	8
						circular line	0.257	207
						straight line	0.271
1qby	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.215		14			8	3
						circular line	0.393	174

Abbreviations