Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5c - Page 1:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the goodness of fit sigma2(single-kink line) (s(2)).

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Number of structures: 59 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1qms	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.018		7			7	5
						circular line	0.026	181
						straight line	0.132
474d	gdjb58	E   |    H   |    B	10	nuc	diff	single-kink line	0.029		4			4	6
						circular line	0.036	283
						straight line	0.054
227d	gdl036	E   |    H   |    B	12	nuc	diff	single-kink line	0.035		10			4	8
						circular line	0.079	163
358d	gdjb55	E   |    H   |    B	10	nuc	diff	single-kink line	0.038		12			5	5
						circular line	0.044	79
469d	ar0015	E   |    H   |    B	12	nuc	diff	single-kink line	0.043		6			8	4
						circular line	0.055	177
						straight line	0.079
444d	dd0005	E   |    H   |    B	12	nuc	diff	single-kink line	0.044		8			4	8
						circular line	0.058	184
						straight line	0.209
468d	ar0016	E   |    H   |    B	12	nuc	diff	single-kink line	0.047		5			8	4
						circular line	0.055	251
						straight line	0.060
1onm	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.050		11			4	7
						circular line	0.096	111
1dk9	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.051		5			3	5
						circular line	0.056	221
						straight line	0.059
395d	adj0112	E   |    H   |    B	10	nuc	diff	single-kink line	0.051		19			5	5
						circular line	0.120	44
311d	gdl052	E   |    H   |    B	12	nuc	diff	single-kink line	0.052		10			4	8
						circular line	0.102	156
102d	gdl032	E   |    H   |    B	12	nuc	diff	single-kink line	0.053		8			4	8
						circular line	0.073	175
						straight line	0.234
1d30	gdl008	E   |    H   |    B	12	nuc	diff	single-kink line	0.056		9			4	8
						circular line	0.104	189
						straight line	0.240
1nk0	pd0376	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.059		7			5	6
						circular line	0.069	175
						straight line	0.157
166d	gdl027	E   |    H   |    B	12	nuc	diff	single-kink line	0.060		9			4	8
						circular line	0.095	162
101d	gdlb31	E   |    H   |    B	12	nuc	diff	single-kink line	0.061		7			7	5
						circular line	0.071	178
						straight line	0.224
2dbe	gdl009	E   |    H   |    B	12	nuc	diff	single-kink line	0.061		9			4	8
						circular line	0.095	187
						straight line	0.230
1mxj	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.063		11			4	7
						circular line	0.106	111
1n3e	pd0360	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.063		13			5	5
						circular line	0.104	80
6bna	gdlb05	E   |    H   |    B	12	nuc	diff	single-kink line	0.063		10			6	6
						circular line	0.064	127
1gcc	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.064		13			4	7
						circular line	0.140	96
1qsx	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.065		12			7	5
						circular line	0.127	109
9bna	bdl020	E   |    H   |    B	12	nuc	diff	single-kink line	0.066		12			5	7
						circular line	0.068	109
1qv8	dd0060	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		8			5	7
						circular line	0.071	162
						straight line	0.257
268d	gdlb42	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		9			5	7
						circular line	0.079	141
2bna	bdl002	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		11			4	8
						circular line	0.094	139
1n1n	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.068		11			5	5
						circular line	0.087	121
1d45	gdl012	E   |    H   |    B	12	nuc	diff	single-kink line	0.069		12			4	8
						circular line	0.097	124
2ezg	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.069		11			3	9
						circular line	0.176	238
1bna	bdl001	E   |    H   |    B	12	nuc	diff	single-kink line	0.070		11			5	7
						circular line	0.076	118
1d46	gdl013	E   |    H   |    B	12	nuc	diff	single-kink line	0.071		10			2	10
						straight line	0.115
						circular line	0.119	462
421d	dr0003	E   |    H   |    B	8	nuc	diff	single-kink line	0.071		13			3	5
						circular line	0.121	75
						straight line	0.211
2ezf	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.072		6			8	4
						circular line	0.074	276
						straight line	0.179
1fms	dd0035	E   |    H   |    B	12	nuc	diff	single-kink line	0.075		11			4	8
						circular line	0.105	131
388d	bdlb84	E   |    H   |    B	12	nuc	diff	single-kink line	0.076		11			4	8
						circular line	0.130	140
1mq3	pd0344	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.077		12			4	6
						circular line	0.127	96
4dnb	bdlb13	E   |    H   |    B	12	nuc	diff	single-kink line	0.078		14			5	7
						circular line	0.103	91
289d	gdl045	E   |    H   |    B	12	nuc	diff	single-kink line	0.079		11			4	8
						circular line	0.112	130
1i3t	bd0048	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		11			5	7
						circular line	0.107	122
1i47	bd0049	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		10			4	8
						circular line	0.109	141
389d	bdlb85	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		12			4	8
						circular line	0.085	117
3hts	pd0073	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.080		9			6	6
						circular line	0.117	138
1dn9	bdl007	E   |    H   |    B	12	nuc	diff	single-kink line	0.085		6			3	9
						straight line	0.101
						circular line	0.107	511
1d99	bdl011	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		14			5	7
						circular line	0.102	91
1l3s	pd0300	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.088		13			7	2
						circular line	0.145	145
						straight line	0.171
360d	gdl056	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		12			4	8
						circular line	0.125	123
365d	gdj057	E   |    H   |    B	10	nuc	diff	single-kink line	0.088		10			5	5
						circular line	0.113	109
1fmq	dd0034	E   |    H   |    B	12	nuc	diff	single-kink line	0.090		11			4	8
						circular line	0.147	149
1hq7	bd0047	E   |    H   |    B	12	nuc	diff	single-kink line	0.094		5			5	7
						circular line	0.104	253
						straight line	0.152
128d	gdlb19	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		9			5	7
						circular line	0.167	168
129d	gdl021	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		9			5	7
						circular line	0.104	151
1yuj	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.097		13			6	5
						circular line	0.127	97
470d	ar0017	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		6			5	6
						circular line	0.106	166
						straight line	0.128
1d20	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.098		8			7	3
						circular line	0.109	188
						straight line	0.139
127d	gdl022	E   |    H   |    B	12	nuc	diff	single-kink line	0.099		10			5	7
						circular line	0.124	132
1njw	pd0372	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.101		9			5	6
						circular line	0.117	131
						straight line	0.276
196d	bdj060	E   |    H   |    B	10	nuc	diff	single-kink line	0.102		5			4	5
						circular line	0.112	219
						straight line	0.130
1sdr	arl062	E   |    H   |    B	12	nuc	diff	single-kink line	0.102		16			6	6
						circular line	0.144	64
194d	bdl059	E   |    H   |    B	12	nuc	diff	single-kink line	0.104		14			4	8
						circular line	0.195	115

Abbreviations