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(-) Description

Title :  FLPE W330F MUTANT-DNA HOLLIDAY JUNCTION COMPLEX
 
Authors :  P. A. Rice, Y. Chen
Date :  23 Apr 03  (Deposition) - 20 May 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Flp, Holliday Junction, Site-Specific Recombination, W330, Flpe, Dna Binding Protein-Recombination-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Rice, Y. Chen
The Role Of The Conserved Trp330 In Flp-Mediated Recombination. Functional And Structural Analysis
J. Biol. Chem. V. 278 24800 2003
PubMed-ID: 12716882  |  Reference-DOI: 10.1074/JBC.M300853200

(-) Compounds

Molecule 1 - 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
    Chains: E, F
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*TP*AP*GP*GP*AP*AP*CP*TP *TP*C)-3'
    Chains: I, J
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - 33-MER
    Chains: G, H
    Engineered: YES
    Other Details: 2PO REPRESENTS 3'-PHOSPHATE WHICH ATTACHED TO C13 OF CHAIN H
    Synthetic: YES
 
Molecule 4 - RECOMBINASE FLP PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21 STAR (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: FLPE
    Gene: FLP1
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: C-TERMINAL (HIS)6 TAG VIA A GLYCINE LINKER
    Synonym: PROTEIN ABLE
 
Molecule 5 - RECOMBINASE FLP PROTEIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21 STAR (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: FLPE
    Gene: FLP1
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: POSTTRANSLATIONAL MODIFICATION OF TYR343 TO PTR. THIS MODIFICATION IS A RESULT OF COVALENT BINDING TO DNA.
    Synonym: PROTEIN ABLE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
12PO1Ligand/IonPHOSPHONATE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG D:191 , LYS D:223 , HIS D:305 , DC H:13 , DT H:14BINDING SITE FOR RESIDUE 2PO H 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1P4E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1P4E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1P4E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1P4E)

(-) Exons   (0, 0)

(no "Exon" information available for 1P4E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:400
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1p4ea1 A:2-129 Flp recombinase                                                                                                       d1p4ea2 A:136-422 Flp recombinase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1p4eA01 A:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    ---   ----------------      --1p4eA02 A:138-419 Intergrase catalytic core                                                                                                                                                                                                                                               --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee....---.hhhhhhhhhhhhhhh------..hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh....------------.....hhhhhhhhh..eee......eee.....hhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p4e A   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQ---SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDK------------QITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101        |-  |    121       | -    |  141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 |       -    |  351       361       371       381       391       401       411       421 
                                                                                                                                      110 114            129    136                                                                                                                                                                                                  333          346                                                                            


Chain B from PDB  Type:PROTEIN  Length:413
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                               423       
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 |       
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI-------   -
               SCOP domains d1p4eb1 B:2-129 Flp recombinase                                                                                                       d1p4eb2 B:136-430 Flp recombinase                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -1p4eB01 B:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    ----  ----------------      --1p4eB02 B:138-419 Intergrase catalytic core                                                                                                                                                                                                                                               ----------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee.....--.hhhhhhhhhhhhhhh------.hhhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh...--------..........hhhhhhhhh..eeee....eeee.....hhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p4e B   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQK--SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSD--------TTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRIGHHHHHH 430
                                    11        21        31        41        51        61        71        81        91       101       111  |    121       | -    |  141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331|      341       351       361       371       381       391       401       411       421         
                                                                                                                                       111  |            129    136                                                                                                                                                                                                 332      341                                                                                         
                                                                                                                                          114                                                                                                                                                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:400
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1p4ec1 C:2-129 Flp recombinase                                                                                                        d1p4ec2 C:137-422 Flp recombinase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -1p4eC01 C:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    -     ----------------       -1p4eC02 C:138-417 Intergrase catalytic core                                                                                                                                                                                                                                             ----- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhhhh-------hhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee.......----....ee....hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhh.........hhhhhhhhh..eeee....eeee.....hhhhhhhhhhh-----hhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p4e C   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG----NKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-----EGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101      |  -  |    121       | -     | 141       151       161       171       181       191       201       211       221       231       241       251       261 |    |271       281       291       301       311       321       331       341 |     351       361       371       381       | -   |   401       411       421 
                                                                                                                                    108   114            129     137                                                                                                                           263  268                                                                        343-PTR                                       389   395                           


Chain D from PDB  Type:PROTEIN  Length:409
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1p4ed1 D:2-130 Flp recombinase                                                                                                       d1p4ed2 D:136-422 Flp recombinase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1p4eD01 D:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    -     -----------------     --1p4eD02 D:138-418 Intergrase catalytic core                                                                                                                                                                                                                                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhhhh.-----.hhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee........--.....ee....hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhh........hhhhhhhhh..eeee....eeee.....hhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p4e D   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFESS-----GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGN--SNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101      |  -  |    121        |-    |  141       151       161       171       181       191       201       211       221       231       241       251       261  |  | 271       281       291       301       311       321       331       341 |     351       361       371       381       391       401       411       421 
                                                                                                                                    108   114             130   136                                                                                                                             264  |                                                                         343-PTR                                                                           
                                                                                                                                                                                                                                                                                                   267                                                                                                                                                           


Chain E from PDB  Type:DNA  Length:13
                                             
                 1p4e E   1 TAAGTTCCTATTC  13
                                    10   


Chain F from PDB  Type:DNA  Length:13
                                             
                 1p4e F   1 TAAGTTCCTATTC  13
                                    10   


Chain G from PDB  Type:DNA  Length:33
                                                                 
                 1p4e G   1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC  33
                                    10        20        30   


Chain H from PDB  Type:DNA  Length:33
                                                                 
                 1p4e H   1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC  33
                                    10        20        30   


Chain I from PDB  Type:DNA  Length:20
                                                    
                 1p4e I  14 TTTAAAAGAATAGGAACTTC  33
                                    23        33


Chain J from PDB  Type:DNA  Length:20
                                                    
                 1p4e J  14 TTTAAAAGAATAGGAACTTC  33
                                    23        33
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1P4E)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (FLP_YEAST | P03870)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008301    DNA binding, bending    The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
    GO:0009009    site-specific recombinase activity    Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0042150    plasmid recombination    A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  1p4e
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    Protein Cavities: castP
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    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  FLP_YEAST | P03870
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLP_YEAST | P03870: 1flo 1m6x

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1P4E)