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(-) Description

Title :  FLP RECOMBINASE-HOLLIDAY JUNCTION COMPLEX I
 
Authors :  Y. Chen, U. Narendra, L. E. Iype, M. M. Cox, P. A. Rice
Date :  14 Aug 00  (Deposition) - 04 Sep 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Tyrosine Recombinase, Protein-Dna Complex, Holliday- Junction, Domain-Swapping, Ligase, Lyase/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Chen, U. Narendra, L. E. Iype, M. M. Cox, P. A. Rice
Crystal Structure Of A Flp Recombinase-Holliday Junction Complex: Assembly Of An Active Oligomer By Helix Swapping.
Mol. Cell V. 6 885 2000
PubMed-ID: 11090626  |  Reference-DOI: 10.1016/S1097-2765(00)00086-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SYMMETRIZED FRT DNA SITES
    Chains: E, G, I, K
    Engineered: YES
    Other Details: DNA 13-MER
    Synthetic: YES
 
Molecule 2 - SYMMETRIZED FRT DNA SITES
    Chains: F, H, J, L
    Engineered: YES
    Other Details: DNA 20-MER
    Synthetic: YES
 
Molecule 3 - FLP RECOMBINASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FLP
    Gene: FLP1
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: SITE-SPECIFIC RECOMBINASE, PROTEIN ABLE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1PHS4Ligand/IonPHOSPHONIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TYR D:343 , DC E:-5 , DT J:-3BINDING SITE FOR RESIDUE PHS E -4
2AC2SOFTWAREARG B:191 , LYS B:223 , HIS B:305 , ARG B:308 , TYR C:343 , DC G:-5 , DT L:-3BINDING SITE FOR RESIDUE PHS G -4
3AC3SOFTWAREARG C:191 , HIS C:305 , DT H:-3 , DC I:-5BINDING SITE FOR RESIDUE PHS I -4
4AC4SOFTWAREARG D:191 , HIS D:305 , DT F:-3 , DC K:-5BINDING SITE FOR RESIDUE PHS K -4
5CTAAUTHORARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TRP A:330 , TYR D:343ACTIVE CATALYTIC SITE OF MONOMER A. Y343 IS DONATED BY MONOMER D.
6CTBAUTHORARG B:191 , LYS B:223 , HIS B:305 , ARG B:308 , TRP B:330 , TYR C:343ACTIVE CATALYTIC SITE OF MONOMER B. Y343 IS DONATED BY MONOMER C.
7CTCAUTHORARG C:191 , LYS C:223 , HIS C:305 , ARG C:308 , TRP C:330 , TYR A:343INACTIVE CATALYTIC SITE OF MONOMER C. Y343 IS DONATED BY MONOMER A.
8CTDAUTHORARG D:191 , LYS D:223 , HIS D:305 , ARG D:308 , TRP D:330INACTIVE CATALYTIC SITE OF MONOMER D. Y343 IS DONATED BY MONOMER B, IS DISORDERED.
9PHOAUTHORPHS E:-4 , PHS G:-4 , PHS K:-4 , PHS I:-4SCISSLE PHOSPHATES

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FLO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FLO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FLO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FLO)

(-) Exons   (0, 0)

(no "Exon" information available for 1FLO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421  
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
               SCOP domains d1floa1 A:2-129 Flp recombinase                                                                                                      d1floa2 A:135-423 Flp recombinase                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -1floA01 A:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    -     ----------------     -----------------1floA02 A:152-422 Intergrase catalytic core                                                                                                                                                                                                                                    - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..eee....eeeee....hhhhhhhhhhhhh...eeeee...-----.hhhhhhhhhhhhhhh-----..hhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeee.......eeeeee........eeeee.......hhhhhhhhhhhhh..ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh....hhhhhhh....-------..........hhhhhhhhh..eeee....eeee.....hhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1flo A   2 PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYY-----SDITDIVSSLQLQFES-----KGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDK-------TTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
                                    11        21        31        41        51        61        71        81        91       101      |  -  |    121       | -   |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 |     341       351       361       371       381       391       401       411       421  
                                                                                                                                    108   114            129   135                                                                                                                                                                                                   333     341                                                                                  


Chain B from PDB  Type:PROTEIN  Length:408
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421  
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
               SCOP domains d1flob1 B:2-129 Flp recombinase                                                                                                      d1flob2 B:135-423 Flp recombinase                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -1floB01 B:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    ----------------------     -----------------1floB02 B:152-419 Intergrase catalytic core                                                                                                                                                                                                                                 ---- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..eee....eeeee....hhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeee.......eeeeee........eeeee.......hhhhhhhhhhhhh..ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh....hhhhhhh.....---------.......hhhhhhhhh..eeee....eeee.....hhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1flo B   2 PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES-----KGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKR---------THQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
                                    11        21        31        41        51        61        71        81        91       101       111       121       | -   |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  |      -  |    351       361       371       381       391       401       411       421  
                                                                                                                                                         129   135                                                                                                                                                                                                    334       344                                                                               


Chain C from PDB  Type:PROTEIN  Length:404
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421  
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
               SCOP domains d1floc1 C:2-129 Flp recombinase                                                                                                        d1floc2 C:137-423 Flp recombinase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1floC01 C:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    ----------------------       ---------------1floC02 C:152-419 Intergrase catalytic core                                                                                                                                                                                                                                 ---- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhee.....eeeee....hhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhhh-------hhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhhhh...........----..........hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhh........hhhhhhhh..eee......eee.....hhhhhhhhh..-------...........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1flo C   2 PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG----NKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-------SIRYPAWNGIISQEVLDYLSSYINRRI 423
                                    11        21        31        41        51        61        71        81        91       101       111       121       | -     | 141       151       161       171       181       191       201       211       221       231       241       251       261 |    |271       281       291       301       311       321       331       341       351       361       371       381       | -     | 401       411       421  
                                                                                                                                                         129     137                                                                                                                           263  268                                                                                                                      389     397                          


Chain D from PDB  Type:PROTEIN  Length:405
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421  
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI 423
               SCOP domains d1flod1 D:2-129 Flp recombinase                                                                                                         d1flod2 D:138-423 Flp recombinase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -1floD01 D:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    ----------------------        --------------1floD02 D:152-419 Intergrase catalytic core                                                                                                                                                                                                                                 ---- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhee......eeee....hhhhhhhhhhh......eeee.........hhhhhhhhhhhhhhh--------hhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhhhh...........--............hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhh........hhhhhhhh..eee......eee.....hhhhhhhhh..-------...........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1flo D   2 PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFES--------SHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG--SSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-------SIRYPAWNGIISQEVLDYLSSYINRRI 423
                                    11        21        31        41        51        61        71        81        91       101       111       121       | -      |141       151       161       171       181       191       201       211       221       231       241       251       261 |  |  271       281       291       301       311       321       331       341       351       361       371       381       | -     | 401       411       421  
                                                                                                                                                         129      138                                                                                                                          263  |                                                                                                                        389     397                          
                                                                                                                                                                                                                                                                                                  266                                                                                                                                                             


Chain E from PDB  Type:DNA  Length:13
                                             
                 1flo E -17 TAAGTTCCTATTC  -5
                                    -8   


Chain F from PDB  Type:DNA  Length:20
                                                    
                 1flo F  -3 TTTAAAAGAATAGGAACTTC  17
                              ||     7        17
                             -1|                
                               1                


Chain G from PDB  Type:DNA  Length:13
                                             
                 1flo G -17 TAAGTTCCTATTC  -5
                                    -8   


Chain H from PDB  Type:DNA  Length:20
                                                    
                 1flo H  -3 TTTAAAAGAATAGGAACTTC  17
                              ||     7        17
                             -1|                
                               1                


Chain I from PDB  Type:DNA  Length:13
                                             
                 1flo I -17 TAAGTTCCTATTC  -5
                                    -8   


Chain J from PDB  Type:DNA  Length:19
                                                   
                 1flo J  -3 TTTAAAAGAATAGGAACTT  16
                              ||     7         
                             -1|               
                               1               


Chain K from PDB  Type:DNA  Length:13
                                             
                 1flo K -17 TAAGTTCCTATTC  -5
                                    -8   


Chain L from PDB  Type:DNA  Length:19
                                                   
                 1flo L  -3 TTTAAAAGAATAGGAACTT  16
                              ||     7         
                             -1|               
                               1
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FLO)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (FLP_YEAST | P03870)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008301    DNA binding, bending    The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
    GO:0009009    site-specific recombinase activity    Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0042150    plasmid recombination    A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  1flo
    Family and Domain Information: ProDom | SYSTERS
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