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(-) Description

Title :  DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT
 
Authors :  J. -H. Lee, G. -S. Hwang, B. -S. Choi
Date :  24 Aug 99  (Deposition) - 10 Apr 00  (Release) - 22 Feb 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Dna, Deoxyribonucleic Acid, Dna Photoproduct, (6-4) Adduct, Mutagenesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -H. Lee, Y. -J. Choi, B. -S. Choi
Solution Structure Of A Dna Decamer Duplex Containing The 3' T. T Base Pair Of The Cis-Syn Cyclobutane Pyrimidine Dimer: Implication For The Mutagenic Property Of The Cis-Syn Dimer.
Nucleic Acids Res. V. 28 1794 2000
PubMed-ID: 10734199  |  Reference-DOI: 10.1093/NAR/28.8.1794

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*TP*+TP*AP*CP*GP*C)- 3')
    Chains: A
    Engineered: YES
    Other Details: CYCLOBUTANE RING FORMED BETWEEN C5-C6(T5) AND C5-C6(T6) DOUBLE BONDS
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*CP*GP*TP*TP*AP*TP*GP*CP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure : AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1PBT2Mod. Nucleotide[3-HYDROXY-5-(5-METHYL-2,4-DIOXOTETRAHYDRO-1(2H)-PYRIMIDINYL)TETRAHYDRO-2-FURANYL]METHYL DIHYDROGENPHOSPHATE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
1PBT2Mod. Nucleotide[3-HYDROXY-5-(5-METHYL-2,4-DIOXOTETRAHYDRO-1(2H)-PYRIMIDINYL)TETRAHYDRO-2-FURANYL]METHYL DIHYDROGENPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1QL5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QL5)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1ql5 A  1 CGCAxxACGC 10
                                ||  10
                                ||    
                                5-PBT 
                                 6-PBT


Chain B from PDB  Type:DNA  Length:10
                                         
                  1ql5 B 11 GCGTTATGCG 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1QL5)

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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