Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5c - Page 3:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the goodness of fit sigma2(single-kink line) (s(2)).

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Number of structures: 61 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
383d	adjb110	E   |    H   |    B	10	nuc	diff	single-kink line	0.218		33			5	5
						circular line	0.270	25
1aio	ddlb73	E   |    H   |    B	12	nuc	diff	single-kink line	0.221		30			6	6
						circular line	0.383	35
327d	adjb88	E   |    H   |    B	10	nuc	diff	single-kink line	0.221		20			5	5
						circular line	0.273	42
414d	ad0002	E   |    H   |    B	10	nuc	diff	single-kink line	0.222		27			5	5
						circular line	0.323	34
1bpx	pde0126	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.226		11			3	7
						circular line	0.261	139
						straight line	0.298
1rxa	arh063	E   |    H   |    B	8	nuc	diff	single-kink line	0.229		30			4	4
						circular line	0.336	24
1a1i	pdt059	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.230		12			6	4
						circular line	0.249	92
404d	ah0001	E   |    H   |    B	10	nuc	diff	single-kink line	0.232		21			5	5
						circular line	0.411	45
409d	ar0004	E   |    H   |    B	8	nuc	diff	single-kink line	0.237		29			4	4
						circular line	0.336	25
138d	adj051	E   |    H   |    B	10	nuc	diff	single-kink line	0.240		24			5	5
						circular line	0.291	37
440d	ad0003	E   |    H   |    B	10	nuc	diff	single-kink line	0.246		29			4	6
						circular line	0.374	32
1t7p	pde0135	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.248		9			4	7
						circular line	0.268	142
						straight line	0.358
1a1f	pdt055	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.252		15			7	3
						circular line	0.424	91
1h9d	pd0210	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.255		11			6	3
						circular line	0.342	126
						straight line	0.400
1coc	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.262		24			5	7
						circular line	0.271	58
438d	ar0011	E   |    H   |    B	8	nuc	diff	single-kink line	0.262		21			3	5
						circular line	0.289	40
1nk6	pd0379	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.264		24			6	2
						circular line	0.445	60
443d	dd0004	E   |    H   |    B	12	nuc	diff	single-kink line	0.267		20			8	4
						circular line	0.355	79
396d	adj0113	E   |    H   |    B	10	nuc	diff	single-kink line	0.279		28			5	5
						circular line	0.457	32
1hwv	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.286		30			8	3
						circular line	0.464	60
1qss	pd0066	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.287		17			5	7
						circular line	0.458	77
1nk9	pd0382	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.306		30			6	6
						circular line	0.330	39
334d	gdj054	E   |    H   |    B	10	nuc	diff	single-kink line	0.309		19			7	3
						circular line	0.445	85
137d	adj050	E   |    H   |    B	10	nuc	diff	single-kink line	0.312		25			5	5
						circular line	0.348	35
221d	adj067	E   |    H   |    B	10	nuc	diff	single-kink line	0.319		32			5	5
						circular line	0.322	27
1msf	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.323		12			7	4
						circular line	0.448	121
442d	dd0003	E   |    H   |    B	12	nuc	diff	single-kink line	0.331		20			8	4
						circular line	0.406	80
1pgc	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.338		22			8	4
						circular line	0.519	66
1o3r	pd0399	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.347		33			6	5
						circular line	0.391	34
1eyu	pd0147	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.352		13			5	6
						circular line	0.414	96
401d	ad0001	E   |    H   |    B	10	nuc	diff	single-kink line	0.356		26			5	5
						circular line	0.496	34
1rn9	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.362		17			4	6
						circular line	0.370	61
1evp	ah0011	E   |    H   |    B	10	nuc	diff	single-kink line	0.368		28			5	5
						circular line	0.563	31
1fj5	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.387		30			6	5
						circular line	0.408	35
320d	adj081	E   |    H   |    B	10	nuc	diff	single-kink line	0.391		31			5	5
						circular line	0.420	29
349d	adj0103	E   |    H   |    B	10	nuc	diff	single-kink line	0.397		24			5	5
						circular line	0.492	37
348d	adj0102	E   |    H   |    B	10	nuc	diff	single-kink line	0.398		26			5	5
						circular line	0.503	34
1qrv	pd0110	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.412		48			4	5
						circular line	0.506	16
1ca5	pd0119	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.429		26			3	5
						circular line	0.555	35
1mxk	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.437		37			6	4
						circular line	0.555	29
1dsi	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.463		17			8	3
						circular line	0.530	89
1c8c	pd0143	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.465		31			2	6
						circular line	0.659	42
1axv	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.467		19			6	5
						circular line	0.589	68
126d	bdj051	E   |    H   |    B	10	nuc	diff	single-kink line	0.500		21			7	3
						circular line	0.606	74
384d	adjb111	E   |    H   |    B	10	nuc	diff	single-kink line	0.519		20			8	2
						circular line	0.564	74
						straight line	0.664
479d	ah0005	E   |    H   |    B	9	nuc	diff	single-kink line	0.521		19			5	3
						circular line	0.698	51
1f5e	------	E   |    H   |    B	10	prot-nuc	NMR	single-kink line	0.543		22			6	4
						circular line	0.625	54
1e3o	pd0225	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.563		24			7	4
						circular line	0.744	54
1dxn	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.608		20			3	9
						circular line	0.729	106
1azp	pdr047	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.632		35			2	6
						circular line	0.736	41
1o3q	pd0398	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.663		27			6	5
						circular line	0.713	43
1bbx	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.692		12			6	6
						circular line	0.702	115
1pqq	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.700		24			5	6
						circular line	0.730	45
1i7v	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.701		22			5	6
						circular line	0.874	60
1djd	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.771		22			5	6
						circular line	0.844	62
1bf4	pd0088	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.785		37			2	6
						straight line	0.857
						circular line	0.945	54
1au5	------	E   |    H   |    B	8	nuc	NMR	single-kink line	0.833		56			4	4
						circular line	0.867	15
3pvi	pd0006	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.870		12			7	5
						circular line	0.976	127
1c4l	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.873		45			5	4
						circular line	0.910	19
1bnz	pd0012	E   |    H   |    B	8	prot-nuc	diff	single-kink line	1.004		35			3	5
						circular line	1.034	29
1b01	pd0091	E   |    H   |    B	10	prot-nuc	diff	single-kink line	1.128		40			6	4
						circular line	1.182	27

Abbreviations