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(-) Description

Title :  FLPE-HOLLIDAY JUNCTION COMPLEX
 
Authors :  A. B. Conway, Y. Chen, P. A. Rice
Date :  17 Jul 02  (Deposition) - 04 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Tyrosine Recombinase, Protein-Dna Complex, Holliday- Junction, Domain-Swapping, Ligase, Lyase/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. B. Conway, Y. Chen, P. A. Rice
Structural Plasticity Of The Flp-Holliday Junction Complex
J. Mol. Biol. V. 326 425 2003
PubMed-ID: 12559911  |  Reference-DOI: 10.1016/S0022-2836(02)01370-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SYMMETRIZED FRT SITE
    Chains: E, F
    Engineered: YES
    Other Details: DNA 13-MER
    Synthetic: YES
 
Molecule 2 - SYMMETRIZED FRT SITE
    Chains: I, J
    Engineered: YES
    Other Details: DNA 20-MER
    Synthetic: YES
 
Molecule 3 - SYMMETRIZED FRT SITE
    Chains: G, H
    Engineered: YES
    Other Details: DNA 33-MER
    Synthetic: YES
 
Molecule 4 - FLP RECOMBINASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FLPE
    Gene: FLP1
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
 
Molecule 5 - FLP RECOMBINASE
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FLPE
    Gene: FLP1
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: MODIFIED TYR343

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1CTAAUTHORARG A:191 , LYS A:223 , HIS A:305 , ARG A:308 , TRP A:330 , ARG B:191ACTIVE CATALYTIC SITE OF MONOMER A. Y343 IS DONATED BY MONOMER D.
2CTBAUTHORLYS B:223 , HIS B:305 , ARG B:308 , TRP B:330 , ARG C:191 , LYS C:223ACTIVE CATALYTIC SITE OF MONOMER B. Y343 IS DONATED BY MONOMER C.
3CTCAUTHORHIS C:305 , ARG C:308 , TRP C:330 , ARG D:191 , HIS D:305INACTIVE CATALYTIC SITE OF MONOMER C. Y343 IS DONATED BY MONOMER A IS DISORDERED.
4CTDAUTHORARG D:191 , LYS D:223 , HIS D:305 , ARG D:308 , TRP D:330INACTIVE CATALYTIC SITE OF MONOMER D. Y343 IS DONATED BY MONOMER B.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M6X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M6X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M6X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M6X)

(-) Exons   (0, 0)

(no "Exon" information available for 1M6X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1m6xa1 A:2-129 Flp recombinase                                                                                                       d1m6xa2 A:136-422 Flp recombinase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1m6xA01 A:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    --    ----------------      -1m6xA02 A:137-419 Intergrase catalytic core                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee...----.hhhhhhhhhhhhh..------hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh....------------.....hhhhhhhhh..eee......eee.....hhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6x A   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNG----SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDK------------QITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101       | -  |    121       | -    |  141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 |       -    |  351       361       371       381       391       401       411       421 
                                                                                                                                     109  114            129    136                                                                                                                                                                                                  333          346                                                                            


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1m6xb1 B:2-129 Flp recombinase                                                                                                       d1m6xb2 B:136-422 Flp recombinase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1m6xB01 B:3-107 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                    --    ----------------      -1m6xB02 B:137-419 Intergrase catalytic core                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee...----.hhhhhhhhhhhhh..------...hhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee...............ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh...----------........hhhhhhhhhh.eee......eee.....hhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6x B   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNG----SDITDIVSSLQLQFES------GNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSD----------YTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101       | -  |    121       | -    |  141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331|        - |     351       361       371       381       391       401       411       421 
                                                                                                                                     109  114            129    136                                                                                                                                                                                                 332        343                                                                               


Chain C from PDB  Type:PROTEIN  Length:400
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1m6xc1 C:2-129 Flp recombinase                                                                                                        d1m6xc2 C:137-422 Flp recombinase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -1m6xC01 C:3-106 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                   --     ----------------       1m6xC02 C:137-417 Intergrase catalytic core                                                                                                                                                                                                                                              ----- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhh..-------hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeeeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee.......----....ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhh.......hhhhhhhhh..eeee....eeee.....hhhhhhhhhhh-----hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6x C   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTG----NKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-----EGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101      |  -  |    121       | -     | 141       151       161       171       181       191       201       211       221       231       241       251       261 |    |271       281       291       301       311       321       331       341 |     351       361       371       381       | -   |   401       411       421 
                                                                                                                                    108   114            129     137                                                                                                                           263  268                                                                        343-PTR                                       389   395                           


Chain D from PDB  Type:PROTEIN  Length:400
 aligned with FLP_YEAST | P03870 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
            FLP_YEAST     2 PQFGILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR 422
               SCOP domains d1m6xd1 D:2-129 Flp recombinase                                                                                                        d1m6xd2 D:137-422 Flp recombinase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -1m6xD01 D:3-106 FLP Recombinase,  lambda integrase-like, N-terminal domain (domain 1)                   --     ----------------       1m6xD02 D:137-417 Intergrase catalytic core                                                                                                                                                                                                                                              ----- CATH domains
           Pfam domains (1) ------------------------------------------Flp_N-1m6xD05 D:44-128                                                               -       Flp_C-1m6xD01 D:137-380                                                                                                                                                                                                                             ---------     ---------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------Flp_N-1m6xD06 D:44-128                                                               -       Flp_C-1m6xD02 D:137-380                                                                                                                                                                                                                             ---------     ---------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------Flp_N-1m6xD07 D:44-128                                                               -       Flp_C-1m6xD03 D:137-380                                                                                                                                                                                                                             ---------     ---------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------Flp_N-1m6xD08 D:44-128                                                               -       Flp_C-1m6xD04 D:137-380                                                                                                                                                                                                                             ---------     ---------------------------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhheee....eeeeee...hhhhhhhhhhhhh...eeeeee..-----.hhhhhhhhhhhhh..-------hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhheeeee...eeeeeeee........eeeee.......hhhhhhhhhhh....ee........----...ee....hhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh......hhhhhhhhhh.eeee....eeee.....hhhhhhhhhhh-----hhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m6x D   2 SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYN-----SDITDIVSSLQLQFES-------NSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGN----KQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTyTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQ-----EGSIRYPAWNGIISQEVLDYLSSYINRR 422
                                    11        21        31        41        51        61        71        81        91       101      |  -  |    121       | -     | 141       151       161       171       181       191       201       211       221       231       241       251       261  |    271       281       291       301       311       321       331       341 |     351       361       371       381       | -   |   401       411       421 
                                                                                                                                    108   114            129     137                                                                                                                            264  269                                                                       343-PTR                                       389   395                           


Chain E from PDB  Type:DNA  Length:13
                                             
                 1m6x E   1 TAAGTTCCTATTC  13
                                    10   


Chain F from PDB  Type:DNA  Length:13
                                             
                 1m6x F   1 TAAGTTCCTATTC  13
                                    10   


Chain G from PDB  Type:DNA  Length:33
                                                                 
                 1m6x G   1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC  33
                                    10        20        30   


Chain H from PDB  Type:DNA  Length:33
                                                                 
                 1m6x H   1 TAAGTTCCTATTCTTTAAAAGAATAGGAACTTC  33
                                    10        20        30   


Chain I from PDB  Type:DNA  Length:19
                                                   
                 1m6x I  14 TTTAAAAGAATAGGAACTT  32
                                    23         


Chain J from PDB  Type:DNA  Length:20
                                                    
                 1m6x J  14 TTTAAAAGAATAGGAACTTC  33
                                    23        33
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: DNA-mend (28)
(-)
Clan: no clan defined [family: Flp_N] (1)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (FLP_YEAST | P03870)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008301    DNA binding, bending    The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
    GO:0003690    double-stranded DNA binding    Interacting selectively and non-covalently with double-stranded DNA.
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
    GO:0009009    site-specific recombinase activity    Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences.
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0042150    plasmid recombination    A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  1m6x
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        FLP_YEAST | P03870: 1flo 1p4e

(-) Related Entries Specified in the PDB File

1flo CRYSTAL STRUCTURE OF A FLP RECOMBINASE-HOLLIDAY JUNCTION COMPLEX