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5UTY
Biol. Unit 1
Info
Asym.Unit (520 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A STABILIZED DS-SOSIP.MUT4 BG505 GP140 HIV-1 ENV TRIMER, CONTAINING MUTATIONS I201C-P433C (DS), L154M, N300M, N302M, T320L IN COMPLEX WITH HUMAN ANTIBODIES PGT122 AND 35O22 AT 4.1 ANGSTROM
Authors
:
K. Xu, G. -Y. Chuang, M. Pancera, P. D. Kwong
Date
:
15 Feb 17 (Deposition) - 29 Mar 17 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.41
Chains
:
Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L (3x)
Keywords
:
Hiv-1 Env, Stabilized Env, Near-Native Mimic Of The Viral Spike, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Y. Chuang, H. Geng, M. Pancera, K. Xu, C. Cheng, P. Acharya, M. Chambers, A. Druz, Y. Tsybovsky, T. G. Wanninger, Y. Yang, N. A. Doria-Rose, I. S. Georgiev, J. Gorman, M. G. Joyce, S. O'Dell, T. Zhou, A. B. Mcdermott, J. R. Mascola, P. D. Kwong
Structure-Based Design Of A Soluble Prefusion-Closed Hiv-1 Env Trimer With Reduced Cd4 Affinity And Improved Immunogenicity.
J. Virol. V. 91 2017
[
close entry info
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Hetero Components
(3, 171)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
15
Ligand/Ion
BETA-D-MANNOSE
2
MAN
48
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
108
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:611 , SER B:613
binding site for Mono-Saccharide NAG B 701 bound to ASN B 611
02
AC2
SOFTWARE
ASN B:618 , GLU E:53 , ARG E:54
binding site for Mono-Saccharide NAG B 702 bound to ASN B 618
03
AC3
SOFTWARE
ASN B:637
binding site for Mono-Saccharide NAG B 703 bound to ASN B 637
04
AC4
SOFTWARE
SER B:528 , ARG D:28 , ASN D:30 , PHE D:31 , HIS D:33 , TRP D:50 , SER D:52 , TYR D:53 , ASP D:56 , ASN D:58 , ARG D:98 , ASP D:99 , GLY D:100 , SER D:100A , THR D:100C , HIS E:93 , ASN E:94 , ASN G:88
binding site for Poly-Saccharide residues NAG G 601 through MAN G 606 bound to ASN G 88
05
AC5
SOFTWARE
ASN G:133 , ARG G:151
binding site for Mono-Saccharide NAG G 607 bound to ASN G 133
06
AC6
SOFTWARE
ASN G:137 , ASN H:58 , ARG H:99 , PHE H:100K , THR H:100L , ASP L:92 , THR L:95B
binding site for Poly-Saccharide residues NAG G 608 through MAN G 611 bound to ASN G 137
07
AC7
SOFTWARE
THR G:135 , ASN G:156 , TYR G:173
binding site for Poly-Saccharide residues NAG G 612 through MAN G 616 bound to ASN G 156
08
AC8
SOFTWARE
GLN G:130 , ASN G:160 , LYS G:169 , LYS G:171
binding site for Poly-Saccharide residues NAG G 617 through NAG G 618 bound to ASN G 160
09
AC9
SOFTWARE
ARG G:192 , ASN G:197
binding site for Poly-Saccharide residues NAG G 619 through NAG G 620 bound to ASN G 197
10
AD1
SOFTWARE
PRO D:72D , VAL D:72E , ASN G:234 , THR G:236 , SER G:274
binding site for Poly-Saccharide residues NAG G 621 through NAG G 622 bound to ASN G 234
11
AD2
SOFTWARE
LYS G:65 , GLU G:211 , ASN G:262 , ASN G:377 , VAL G:446 , SER G:447 , NAG G:651
binding site for Poly-Saccharide residues NAG G 623 through MAN G 628 bound to ASN G 262
12
AD3
SOFTWARE
ASN G:276 , THR G:278 , ASN G:279
binding site for Mono-Saccharide NAG G 629 bound to ASN G 276
13
AD4
SOFTWARE
ASN G:295 , ASN G:332 , SER G:334
binding site for Poly-Saccharide residues NAG G 630 through NAG G 631 bound to ASN G 295
14
AD5
SOFTWARE
ASN G:301 , ILE G:323 , VAL G:442
binding site for Poly-Saccharide residues NAG G 632 through NAG G 633 bound to ASN G 301
15
AD6
SOFTWARE
THR G:297 , ARG G:327 , HIS G:330 , ASN G:332 , THR G:415 , ARG H:100 , ILE H:100A , GLY H:100C , VAL H:100D , SER L:30 , ASN L:51 , PRO L:66 , GLY L:67 , SER L:67A
binding site for Poly-Saccharide residues NAG G 634 through MAN G 643 bound to ASN G 332
16
AD7
SOFTWARE
ASN G:339 , TRP G:395
binding site for Mono-Saccharide NAG G 653 bound to ASN G 339
17
AD8
SOFTWARE
LYS G:351 , ASN G:355
binding site for Mono-Saccharide NAG G 644 bound to ASN G 355
18
AD9
SOFTWARE
ASN G:363 , SER G:364 , SER G:388 , NAG G:647 , NAG G:648 , NAG G:649
binding site for Poly-Saccharide residues NAG G 645 through NAG G 646 bound to ASN G 363
19
AE1
SOFTWARE
ASN G:386 , SER G:388 , NAG G:645 , NAG G:646 , NAG G:649
binding site for Poly-Saccharide residues NAG G 647 through NAG G 648 bound to ASN G 386
20
AE2
SOFTWARE
ASN G:392 , NAG G:645 , NAG G:648
binding site for Poly-Saccharide residues NAG G 649 through NAG G 650 bound to ASN G 392
21
AE3
SOFTWARE
ASN G:262 , PRO G:291 , ASN G:448 , NAG G:623
binding site for Poly-Saccharide residues NAG G 651 through NAG G 652 bound to ASN G 448
22
AE4
SOFTWARE
ASN H:23 , LEU H:77
binding site for Mono-Saccharide NAG H 301 bound to ASN H 23
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (520 KB)
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