Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  3.5 ANGSTROM CRYSTAL STRUCTURE OF A FULLY AND NATIVELY GLYCOSYLATED BG505 SOSIP.664 HIV-1 ENV TRIMER IN COMPLEX WITH THE BROADLY NEUTRALIZING ANTIBODIES IOMA AND 10-1074
 
Authors :  H. B. Gristick, P. J. Bjorkman
Date :  26 Aug 16  (Deposition) - 05 Oct 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  B,D,E,G,H,L
Biol. Unit 1:  B,D,E,G,H,L  (3x)
Keywords :  Hiv, N-Linked Glycosylation, Broadly Neutralizing Antibodies, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. B. Gristick, L. Von Boehmer, A. P. West, M. Schamber, A. Gazumyan, J. Golijanin, M. S. Seaman, G. Fatkenheuer, F. Klein, M. C. Nussenzweig, P. J. Bjorkman
Natively Glycosylated Hiv-1 Env Structure Reveals New Mode For Antibody Recognition Of The Cd4-Binding Site.
Nat. Struct. Mol. Biol. V. 23 906 2016
PubMed-ID: 27617431  |  Reference-DOI: 10.1038/NSMB.3291

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP160
    ChainsB
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    FragmentUNP RESIDUES 509-611
    GeneENV
    Organism ScientificHUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid11676
 
Molecule 2 - ENVELOPE GLYCOPROTEIN GP160
    ChainsG
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    FragmentUNP RESIDUES 30-508
    GeneENV
    Organism ScientificHUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid11676
 
Molecule 3 - 10-1074 HEAVY CHAIN
    ChainsH
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 4 - 10-1074 LIGHT CHAIN
    ChainsL
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 5 - IOMA HEAVY CHAIN
    ChainsD
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 6 - IOMA LIGHT CHAIN
    ChainsE
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit BDEGHL
Biological Unit 1 (3x)BDEGHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 89)

Asymmetric Unit (5, 89)
No.NameCountTypeFull Name
1BMA12Ligand/IonBETA-D-MANNOSE
2FUC4Ligand/IonALPHA-L-FUCOSE
3GAL4Ligand/IonBETA-D-GALACTOSE
4MAN27Ligand/IonALPHA-D-MANNOSE
5NAG42Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (5, 267)
No.NameCountTypeFull Name
1BMA36Ligand/IonBETA-D-MANNOSE
2FUC12Ligand/IonALPHA-L-FUCOSE
3GAL12Ligand/IonBETA-D-GALACTOSE
4MAN81Ligand/IonALPHA-D-MANNOSE
5NAG126Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN B:611 , SER B:613 , TRP B:614binding site for Poly-Saccharide residues FUC B 6110 through NAG B 6111 bound to ASN B 611
02AC2SOFTWAREASN B:637binding site for Poly-Saccharide residues NAG B 6370 through BMA B 6372 bound to ASN B 637
03AC3SOFTWAREGLY B:527 , SER B:528 , GLU G:87 , ASN G:88binding site for Poly-Saccharide residues NAG G 880 through NAG G 881 bound to ASN G 88
04AC4SOFTWAREASN G:133 , ASP G:140 , LYS G:155 , LYS G:189 , TYR G:191binding site for Poly-Saccharide residues NAG G 1330 through NAG G 1331 bound to ASN G 133
05AC5SOFTWAREASN G:156 , SER G:158 , TYR G:173 , ASP G:321A , GLN L:26binding site for Poly-Saccharide residues FUC G 1560 through GAL G 1570 bound to ASN G 156
06AC6SOFTWARESER G:158 , PHE G:159 , ASN G:160 , LYS G:171binding site for Poly-Saccharide residues NAG G 1600 through MAN G 1604 bound to ASN G 160
07AC7SOFTWARETHR D:19 , ASP D:72 , TYR D:79 , ARG G:192 , ASN G:197 , ARG G:308binding site for Poly-Saccharide residues NAG G 1970 through NAG G 1977 bound to ASN G 197
08AC8SOFTWAREASN G:234 , THR G:236 , PRO G:238 , SER G:274binding site for Poly-Saccharide residues NAG G 2340 through NAG G 2341 bound to ASN G 234
09AC9SOFTWAREGLU D:1 , GLU G:211 , PRO G:212 , ASN G:262 , ASN G:377 , GLY G:379 , ARG G:444 , CYS G:445 , VAL G:446 , SER G:447 , NAG G:4480binding site for Poly-Saccharide residues NAG G 2620 through MAN G 2626 bound to ASN G 262
10AD1SOFTWARESER D:100D , GLY E:29 , ASP E:31 , ASN G:276 , THR G:278 , ASN G:279binding site for Poly-Saccharide residues FUC G 2760 through MAN G 2767 bound to ASN G 276
11AD2SOFTWAREASN G:295 , SER G:334 , ARG G:444binding site for Poly-Saccharide residues NAG G 2950 through NAG G 2951 bound to ASN G 295
12AD3SOFTWAREGLN D:105 , LYS E:42 , ASN G:301 , ILE G:323 , ARG L:70binding site for Poly-Saccharide residues NAG G 3010 through MAN G 3015 bound to ASN G 301
13AD4SOFTWARETHR G:297 , HIS G:330 , ASN G:332 , THR G:415 , ARG H:100 , ILE H:100A , TYR H:100B , GLY H:100C , VAL H:100D , ILE H:195 , ASP H:208 , ARG H:210 , SER L:30 , ASN L:50 , ASN L:51 , GLN L:52 , PRO L:66 , ASP L:66A , ASN L:66Cbinding site for Poly-Saccharide residues NAG G 3320 through MAN G 3329 bound to ASN G 332
14AD5SOFTWAREASN G:339binding site for Mono-Saccharide NAG G 3390 bound to ASN G 339
15AD6SOFTWAREASN G:355binding site for Mono-Saccharide NAG G 3550 bound to ASN G 355
16AD7SOFTWAREARG D:82B , ASN G:363 , SER G:388 , NAG G:3860 , NAG G:3861 , MAN G:3863binding site for Poly-Saccharide residues NAG G 3630 through MAN G 3636 bound to ASN G 363
17AD8SOFTWAREASN G:386 , SER G:388 , NAG G:3631 , BMA G:3632 , MAN G:3633binding site for Poly-Saccharide residues NAG G 3860 through MAN G 3864 bound to ASN G 386
18AD9SOFTWAREASN G:392binding site for Poly-Saccharide residues FUC G 3920 through BMA G 3923 bound to ASN G 392
19AE1SOFTWAREASN G:262 , ASN G:448 , NAG G:2620binding site for Poly-Saccharide residues NAG G 4480 through BMA G 4482 bound to ASN G 448

(-) SS Bonds  (19, 19)

Asymmetric Unit
No.Residues
1B:598 -B:604
2B:605 -G:501
3D:22 -D:92
4E:23 -E:88
5E:135 -E:194
6G:54 -G:74
7G:119 -G:205
8G:126 -G:196
9G:131 -G:157
10G:218 -G:247
11G:228 -G:239
12G:296 -G:331
13G:378 -G:445
14G:385 -G:418
15H:22 -H:92
16H:140 -H:196
17H:216 -L:212
18L:23 -L:88
19L:135 -L:194

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly G:312 -Pro G:313
2Phe H:146 -Pro H:147
3Glu H:148 -Pro H:149
4Tyr L:141 -Pro L:142
5Ser D:100D-Pro D:100E
6Phe D:146 -Pro D:147
7Glu D:148 -Pro D:149
8Tyr E:141 -Pro E:142

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T3Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T3Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5T3Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhh..hhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                5t3z B  518 VFLGFLGAAGSTMGAASMTLTVQARNLLSGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD  664
                                   527       537       547|      578       588       598       608       618       628       638       648       658      
                                                       547|                                                                                               
                                                        569                                                                                               

Chain D from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......ee........eeeeee....eeeeee...hhhhheeeeee......................eeeee........eeeee..hhhhh...eeeeeeeeeee......eee.hhh..........ee.....eeeeeeeeee.hhh....eeeee........eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5t3z D    1 EVQLVESGAQVKKPGASVTVSCTASGYKFTGYHMHWVRQAPGRGLEWMGWINPFRGAVKYPQNFRGRVSMTRDTSMEIFYMELSRLTSDDTAVYYCAREMFDSSADWSPWRGMVAWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC  216
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|||    107       117       127       137       147       157       167       177       187       197       207         
                                                                              52A                            82A||               100A||||||||                                                                                                                    
                                                                                                              82B|                100B|||||||                                                                                                                    
                                                                                                               82C                 100C||||||                                                                                                                    
                                                                                                                                    100D|||||                                                                                                                    
                                                                                                                                     100E||||                                                                                                                    
                                                                                                                                      100F|||                                                                                                                    
                                                                                                                                       100G||                                                                                                                    
                                                                                                                                        100H|                                                                                                                    
                                                                                                                                         100I                                                                                                                    

Chain E from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee.....eeeeee............eeeee.....eeeee.............eeeeee..eeeeee...hhhhh.eeeee...........eeeee........eeeee..hhhhhh...eeeeeeee.......eeeeee..ee....eee...........eeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5t3z E    2 SALTQPASVSGSPGQSITISCAGSSRDVGGFDLVSWYQQHPGKAPKLIIYEVNKRPSGISSRFSASKSGNTASLTISGLQEEDEAHYYCYSYADGVAFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT  210
                                   |12        22     |||29        39        49        59        69        79        89    || 100       110       120       130       140       150       160       170       180       190       200       210
                                   9|              27A||                                                                 94|                                                                                                                  
                                   11               27B|                                                                  96                                                                                                                  
                                                     27C                                                                                                                                                                                      

Chain G from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.....ee............hhhhhh...................eee....eeee...hhhhhhhhhhhhhhhhhhhh..ee.hhhh..eeeee.........eeeeeeeee......eeeeeeeee...eee.....eeee......eeee...................eeeeee.......eeee..eeee..............ee.........eee..........eeeeeeeeeeeeeee..eeeeeeee.....eeeeeeeee......eeeeehhhhhhhhhhhhhhhh........eee......hhhhhheeeee..eeeee.......eee.....eeeeeeeee.ee.......eeee.......eeeeeeeeeeeee..........eeeee...hhhhhhhhhhh.eeeeee...eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5t3z G   31 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV  505
                                    40        50        60        70        80        90       100       110       120       130       140|      161       171       181   ||  192       202       212       222       232       242       252       262       272       282       292       302      |314       323       333       343       353       363       373       383       393    || 415       425       435       445       455       465       475       485       495       505
                                                                                                                                       140|                              185|                                                                                                                       309|      321A                                                                          398|                                                                                              
                                                                                                                                        152                               187                                                                                                                        312                                                                                     411                                                                                              

Chain H from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....eeeeeee........eeeeeee.....eeeeeee.....eee.hhhh..eeee......eeeeee...hhhhheeeeeeeeeeeeee........eeeeeeeeee...eeeee........eee.........eeeeeeeee.....eeee.........eeeeeee.....eeeeeeee..........eeeeeee....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5t3z H    1 QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSASTKGPSVFPLAPSSKTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC  216
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G|||||||101       111       121       136       146       156       166       176       186       196       206       216
                                                                                                            82A||               100A|||||100J||||||                          129|                                                                                 
                                                                                                             82B|                100B|||||100K|||||                           135                                                                                 
                                                                                                              82C                 100C|||||100L||||                                                                                                               
                                                                                                                                   100D|||||100M|||                                                                                                               
                                                                                                                                    100E|||| 100N||                                                                                                               
                                                                                                                                     100F|||  100O|                                                                                                               
                                                                                                                                      100G||   100P                                                                                                               
                                                                                                                                       100H|                                                                                                                      
                                                                                                                                        100I                                                                                                                      

Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeee........eeeeeeee......eeee.............ee...........eeee...hhhhheeeeeeeee...........eeeeee........eeeee..hhhhhh...eeeeeeeeee....eeeeeee..ee....eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5t3z L    8 VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTEC  212
                                    17        27        37        47        57       66A||      74        84        94 |||   101       111       121       131       141       151       161       171       181       191       201       211 
                                                                                     66A||                           95A||                                                                                                                     
                                                                                      66B|                            95B|                                                                                                                     
                                                                                       66C                             95C                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T3Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T3Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T3Z)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FUC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GAL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu D:148 - Pro D:149   [ RasMol ]  
    Glu H:148 - Pro H:149   [ RasMol ]  
    Gly G:312 - Pro G:313   [ RasMol ]  
    Phe D:146 - Pro D:147   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Ser D:100D - Pro D:100E  [ RasMol ]  
    Tyr E:141 - Pro E:142   [ RasMol ]  
    Tyr L:141 - Pro L:142   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5t3z
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q2N0S6_9HIV1 | Q2N0S6
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q2N0S6_9HIV1 | Q2N0S6
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q2N0S6_9HIV1 | Q2N0S65v7j 5v8l 5v8m 5viy 5vj6 5w6d
UniProtKB/TrEMBL
        Q2N0S6_9HIV1 | Q2N0S63j5m 4nco 4zmj 5aco 5c7k 5cez 5cjx 5d9q 5fyl 5i8h 5js9 5jsa 5t3s 5t3x 5thr 5u1f 5utf 5uty

(-) Related Entries Specified in the PDB File

5t3x