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(-) Description

Title :  STRUCTURE OF HUMAN JAK1 FERM/SH2 IN COMPLEX WITH IFNLR1/IL10RA CHIMERA
 
Authors :  R. Ferrao, H. J. A. Wallweber, P. J. Lupardus
Date :  23 Mar 16  (Deposition) - 18 May 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Jak Kinase, Jak1, Ifnlr1, Il10, Il10Ra, Interferon, Cytokine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Ferrao, H. J. Wallweber, H. Ho, C. Tam, Y. Franke, J. Quinn, P. J. Lupardus
The Structural Basis For Class Ii Cytokine Receptor Recognition By Jak1.
Structure V. 24 897 2016
PubMed-ID: 27133025  |  Reference-DOI: 10.1016/J.STR.2016.03.023

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 35-559
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1,JAK-1
 
Molecule 2 - CHIMERA PROTEIN OF INTERFERON LAMBDA RECEPTOR 1 AND INTERLEUKIN-10 RECEPTOR SUBUNIT ALPHA
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 250-259,UNP RESIDUES 263-303
    Gene: IFNLR1, IL28RA, LICR2, IL10RA, IL10R
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IFN-LAMBDA-R1,CYTOKINE RECEPTOR CLASS-II MEMBER 12,CYTOKINE RECEPTOR FAMILY 2 MEMBER 12,CRF2-12,INTERLEUKIN-28 RECEPTOR SUBUNIT ALPHA,IL-28RA,LIKELY INTERLEUKIN OR CYTOKINE RECEPTOR 2,LICR2,IL- 10RA,CDW210A,INTERLEUKIN-10 RECEPTOR SUBUNIT 1,IL-10R1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IXI)

(-) Sites  (0, 0)

(no "Site" information available for 5IXI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IXI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IXI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IXI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IXI)

(-) Exons   (0, 0)

(no "Exon" information available for 5IXI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee........ee....eeehhhhhhhhhhhh.....hhh.eeeee....ee.....eee....eeeeee.................ee.......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eeeeeeeeeee....eeeeee.eeeeeeee...eeeeee.....eeeehhh.eeeeeee..eeeeee....eeeee..hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh......hhhhhhhhhhhh.eeee......eeeee.eeeeee..eeee.....ee.hhhhhhhhhh...eee..eee.................ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ixi A  36 VEVIFYLSDREPLRLGSGEYTAEELCIRAAQACRISPLCHNLFALYDENTKLWYAPNRTITVMSLRLHYRMRFYFTNWHGTNDNEQSVWRHSPTPLLDASSLEYLFAQGQYDLVKCLAPIRDPKTEQDGHDIENECLGMAVLAISHYAMMKKMSYKRYIPETLNKSIRQRNLLTRMRINNVFKDFLKEFNNKTICDSSVSTHDLKVKYLATLETLTKHYGAEIFETSMLLISSENEMNWFHSVLYYEVMVTGNLGIQWRHKPEEWNNFSFFPEITHIVIKESVVSINKQDNKKMELKLSSHEEALSFVSLVDGYFRLTADAHHYLCTDVAPPLIVHNIQNGCHGPICTEYAINKLRQEYVLRWSCTDFDNILMTNFQIEVQKGRYSLHGSDRSFPSLGDLMSHLKKQILRTDNISFMLKRCCQPKPREISNLLVAT 558
                                    45        55        65        75        85        95 ||    108       118       128  ||   153       163       173       183       193       203  ||   222       232       242       252       262       272       282       292       302 ||    317       327 ||    368       378       388       398       408       418       428       438       448       464       474   ||  502       512       522       532       542       552      
                                                                                        97|                           131|                                                        206|                                                                                     304|                329|                                                                                            456|            478|                                                             
                                                                                        101                            147                                                         216                                                                                      310                 361                                                                                             463             497                                                             


Chain B from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ....hhhhh....hhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 5ixi B 254 TLMGNPWFQRKKLPSVLLFKKPSPFIFIS 282
                                   263       273
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IXI)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (57, 64)

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  JAK1_HUMAN | P23458
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        I10R1_HUMAN | Q13651: 1j7v 1lqs 1y6k 1y6m 1y6n
        INLR1_HUMAN | Q8IU57: 3og4 3og6 5ixd 5l04 5t5w
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5hx8 5ixd 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

5ixd