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(-) Description

Title :  HUMAN JAK1 KINASE IN COMPLEX WITH COMPOUND 30 AT 2.30 ANGSTROMS RESOLUTION
 
Authors :  A. D. Ferguson
Date :  29 Sep 15  (Deposition) - 25 Nov 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Vasbinder, M. Alimzhanov, M. Augustin, G. Bebernitz, K. Bell, C. Chuaqui, T. Deegan, A. D. Ferguson, K. Goodwin, D. Huszar, A. Kawatkar, S. Kawatkar, J. Read, J. Shi, S. Steinbacher, H. Steuber, Q. Su, D. Toader, H. Wang, R. Woessner, A. Wu, M. Ye, M. Zinda
Identification Of Azabenzimidazoles As Potent Jak1 Selectiv Inhibitors.
Bioorg. Med. Chem. Lett. V. 26 60 2016
PubMed-ID: 26614408  |  Reference-DOI: 10.1016/J.BMCL.2015.11.031

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: PROTEIN KINASE 2 DOMAIN RESIDUES 865-1154
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1,JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
15JG2Ligand/Ion6-CHLORO-2-(2-FLUORO-4,5-DIMETHOXYPHENYL)-N-(PIPERIDIN-4-YLMETHYL)-3H-IMIDAZO[4,5-B]PYRIDIN-7-AMINE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
15JG1Ligand/Ion6-CHLORO-2-(2-FLUORO-4,5-DIMETHOXYPHENYL)-N-(PIPERIDIN-4-YLMETHYL)-3H-IMIDAZO[4,5-B]PYRIDIN-7-AMINE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
15JG1Ligand/Ion6-CHLORO-2-(2-FLUORO-4,5-DIMETHOXYPHENYL)-N-(PIPERIDIN-4-YLMETHYL)-3H-IMIDAZO[4,5-B]PYRIDIN-7-AMINE
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:879 , ARG A:893 , GLN A:904 , HOH A:1329binding site for residue PEG A 1201
2AC2SOFTWARELEU A:881 , ALA A:906 , MET A:956 , GLU A:957 , PHE A:958 , LEU A:959 , PRO A:960 , GLY A:962 , GLU A:966 , ARG A:1007 , ASN A:1008 , LEU A:1010 , ASP A:1021 , HOH A:1391binding site for residue 5JG A 1202
3AC3SOFTWARELEU B:881 , ALA B:906 , MET B:956 , GLU B:957 , PHE B:958 , LEU B:959 , PRO B:960 , GLY B:962 , GLU B:966 , ARG B:1007 , ASN B:1008 , LEU B:1010 , GLY B:1020 , ASP B:1021binding site for residue 5JG B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E1E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E1E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E1E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E1E)

(-) Exons   (0, 0)

(no "Exon" information available for 5E1E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee........eeeeeeee..hhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5e1e A  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKNHIADLKKEIEILRNLYHENIVKYKGICTNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884       894       904      |919       929       939     ||953       963       973       983       993      1003      1013      1023      1033||    1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153 
                                                                        911|                         945|                                                                                1034-PTR                                                                                                                    
                                                                         917                          950                                                                                 1035-PTR                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhh.eeeeeeeeee..eeeeeeee........eeeeeeee..hhhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5e1e B  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKNHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884       894       904      |919       929       939      |952       962       972       982       992      1002      1012      1022      1032 ||   1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152  
                                                                        911|                          946|                                                                                1034-PTR                                                                                                                    
                                                                         917                           950                                                                                 1035-PTR
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E1E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E1E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E1E)

(-) Gene Ontology  (42, 42)

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  5e1e
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5hx8 5ixd 5ixi 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

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