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(-) Description

Title :  JAK1 COMPLEX WITH 4-[(4-AMINOCYCLOHEXYL)AMINO]-3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRIDIN-2-ONE
 
Authors :  H. P. Su
Date :  29 Jan 16  (Deposition) - 16 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Simov, S. V. Deshmukh, C. J. Dinsmore, F. Elwood, R. B. Fernandez, Y. Garcia, C. Gibeau, H. Gunaydin, J. Jung, J. D. Katz, B. Kraybill, B. Lapointe, S. B. Patel, T. Siu, H. Su, J. R. Young
Structure-Based Design And Development Of (Benz)Imidazole Pyridones As Jak1-Selective Kinase Inhibitors.
Bioorg. Med. Chem. Lett. V. 26 1803 2016
PubMed-ID: 26927423  |  Reference-DOI: 10.1016/J.BMCL.2016.02.035

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 854-1154
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1,JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
166P2Ligand/Ion4-[(4-AMINOCYCLOHEXYL)AMINO]-3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRIDIN-2-ONE
2PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
166P1Ligand/Ion4-[(4-AMINOCYCLOHEXYL)AMINO]-3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRIDIN-2-ONE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
166P1Ligand/Ion4-[(4-AMINOCYCLOHEXYL)AMINO]-3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRIDIN-2-ONE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:881 , ALA A:906 , GLU A:957 , PHE A:958 , LEU A:959 , GLY A:962 , ARG A:1007 , LEU A:1010 , GLY A:1020 , HOH A:1336binding site for residue 66P A 1201
2AC2SOFTWAREARG B:879 , LEU B:881 , ALA B:906 , GLU B:957 , PHE B:958 , LEU B:959 , PRO B:960 , GLY B:962 , ARG B:1007 , LEU B:1010 , GLY B:1020 , HOH B:1336binding site for residue 66P B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HX8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:1041 -Asp A:1042

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HX8)

(-) Exons   (0, 0)

(no "Exon" information available for 5HX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhh.eeeeeeee.....eeeeeee........eeeeeee....hhhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hx8 A  855 IVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   864       874       884       894       904       918       928       938       951       961       971       981       991      1001      1011      1021      1031  ||  1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151   
                                                                                   912|                          946|                                                                                1034-PTR                                                                                                                    
                                                                                    917                           950                                                                                 1035-PTR                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeee........eeeeeee....hhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hx8 B  865 VDPTHFEKRFLKRIRDLGEGHGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884||     895       905      |919       929       939     ||953       963       973       983       993      1003      1013      1023      1033||    1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153 
                                              885|                      912|                         945|                                                                                1034-PTR                                                                                                                    
                                               887                       917                          950                                                                                 1035-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HX8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HX8)

(-) Gene Ontology  (42, 42)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5ixd 5ixi 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

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