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(-) Description

Title :  CRYSTAL STRUCTURE OF THE APO JAK1 PSEUDOKINASE DOMAIN
 
Authors :  A. V. Toms, M. J. Eck
Date :  30 May 13  (Deposition) - 04 Sep 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Kinase Domain Fold, Regulatory, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. V. Toms, A. Deshpande, R. Mcnally, Y. Jeong, J. M. Rogers, C. U. Kim, S. M. Gruner, S. B. Ficarro, J. A. Marto, M. Sattler, J. D. Griffin, M. J. Eck
Structure Of A Pseudokinase-Domain Switch That Controls Oncogenic Activation Of Jak Kinases.
Nat. Struct. Mol. Biol. V. 20 1221 2013
PubMed-ID: 24013208  |  Reference-DOI: 10.1038/NSMB.2673

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    ChainsA, B
    EC Number2.7.10.2
    EngineeredYES
    FragmentPSEUDOKINASE DOMAIN (UNP RESIDUES 561-860)
    GeneJAK1, JAK1A, JAK1B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymJANUS KINASE 1, JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B
Biological Unit 3 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4L00)

(-) Sites  (0, 0)

(no "Site" information available for 4L00)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L00)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ile A:756 -Pro A:757
2Ile B:756 -Pro B:757

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L00)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L00)

(-) Exons   (0, 0)

(no "Exon" information available for 4L00)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4l00a_ A: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....hhh.eeeeeeeeee..eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee.........eeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l00 A 564 WQPVYPMSQLSFDRILKKDLVQGEHLGRGTRTHIYSGTLMDKKIKVILKVLDPSHRDISLAFFEAASMMRQVSHKHIVYLYGVCVRDVENIMVEEFVEGGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNLLLAREGIDSECGPFIKLSDPGIPITVLSRQECIERIPWIAPECVEDSKNLSVAADKWSFGTTLWEICYNGEIPLKDKTLIEKERFYESRCRPVTPSCKELADLMTRCMNYDPNQRPFFRAIMRDINKLEE 850
                                   573       583       593       603||     623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
                                                                  604|                                                                                                                                                                                                                                           
                                                                   615                                                                                                                                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4l00b_ B: automated matches                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..eehhh.eeeeeeeeee..eeeeeeeee....eeeeeeeee.hhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee.........eeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l00 B 565 QPVYPMSQLSFDRILKKDLVQGEHLGRGTRTHIYSGTLMDYEKKIKVILKVLDPSHRDISLAFFEAASMMRQVSHKHIVYLYGVCVRDVENIMVEEFVEGGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNLLLAREGIDSECGPFIKLSDPGIPITVLSRQECIERIPWIAPECVEDSKNLSVAADKWSFGTTLWEICYNGEIPLKDKTLIEKERFYESRCRPVTPSCKELADLMTRCMNYDPNQRPFFRAIMRDINKLEE 850
                                   574       584       594       604||     622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842        
                                                                  605|                                                                                                                                                                                                                                            
                                                                   614                                                                                                                                                                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L00)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L00)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:756 - Pro A:757   [ RasMol ]  
    Ile B:756 - Pro B:757   [ RasMol ]  
 
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  JAK1_HUMAN | P23458
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P234583eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l01 5e1e 5hx8 5ixd 5ixi 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

4l01