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(-) Description

Title :  JAK1 KINASE (JH1 DOMAIN) IN COMPLEX WITH COMPOUND 72
 
Authors :  C. Eigenbrot, M. Steffek
Date :  12 Jun 12  (Deposition) - 07 Nov 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protein Kinase, Phospho Transfer, Phospho Tyrosine, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Labadie, P. S. Dragovich, K. Barrett, W. S. Blair, P. Bergeron, C. Chang, G. Deshmukh, C. Eigenbrot, N. Ghilardi, P. Gibbons, C. A. Hurley, A. Johnson, J. R. Kenny, P. B. Kohli, J. J. Kulagowski, M. Liimatta, P. J. Lupardus, R. Mendonca, J. M. Murray, R. Pulk, S. Shia M. Steffek, S. Ubhayakar, M. Ultsch, A. Van Abbema, S. Ward, M. Zak
Structure-Based Discovery Of C-2 Substituted Imidazo-Pyrrolopyridine Jak1 Inhibitors With Improved Selectivity Over Jak2.
Bioorg. Med. Chem. Lett. V. 22 7627 2012
PubMed-ID: 23107482  |  Reference-DOI: 10.1016/J.BMCL.2012.10.008

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: JH1 (KINASE) DOMAIN, UNP RESIDUES 854-1154
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1, JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
10UJ2Ligand/IonN-({1-[(1R,2R,4S)-BICYCLO[2.2.1]HEPT-2-YL]-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDIN-2-YL}METHYL)METHANESULFONAMIDE
2PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
10UJ1Ligand/IonN-({1-[(1R,2R,4S)-BICYCLO[2.2.1]HEPT-2-YL]-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDIN-2-YL}METHYL)METHANESULFONAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
10UJ1Ligand/IonN-({1-[(1R,2R,4S)-BICYCLO[2.2.1]HEPT-2-YL]-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDIN-2-YL}METHYL)METHANESULFONAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:879 , LEU A:881 , ALA A:906 , GLU A:957 , PHE A:958 , LEU A:959 , GLY A:962 , GLU A:966 , ARG A:1007 , ASN A:1008 , LEU A:1010 , GLY A:1020BINDING SITE FOR RESIDUE 0UJ A 1201
2AC2SOFTWAREARG B:879 , LEU B:881 , ALA B:906 , GLU B:957 , PHE B:958 , LEU B:959 , GLY B:962 , GLU B:966 , ARG B:1007 , ASN B:1008 , LEU B:1010 , GLY B:1020BINDING SITE FOR RESIDUE 0UJ B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FK6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FK6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FK6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FK6)

(-) Exons   (0, 0)

(no "Exon" information available for 4FK6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4fk6a_ A: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhh.eeeeeeee..eeeeeeee........eeeeeeee....hhhhhhhhhhhhhh........eeeeee......eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fk6 A  863 TEVDPTHFEKRFLKRIRDLGEFGKVELCRYDPEGDNTGEQVAVKSLKPENHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   872       882||     894       904       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147       
                                              883|                        913|                                                                                                                 1034-PTR                                                                                                                    
                                               886                         917                                                                                                                  1035-PTR                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4fk6b_ B: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhh.eeeeeeeee...eeeeeeee........eeeeeeee....hhhhhhhhhhhhhh........eeeeee....eeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fk6 B  864 EVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPENHIADLKKEIEILRNLYHENIVKYKGICTEGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   873       883       893       903       913|      926       936       946|      958       968       978       988       998      1008      1018      1028     |1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      
                                                                           913|                          946|                                                                                 1034-PTR                                                                                                                    
                                                                            917                           949                                                                                  1035-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FK6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FK6)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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  JAK1_HUMAN | P23458
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5hx8 5ixd 5ixi 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

4e4l JAK1 KINASE INHIBITOR COMPLEX
4e4n JAK1 KINASE INHIBITOR COMPLEX