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(-) Description

Title :  STRUCTURE OF AN AFFINITY MATURED LAMBDA-IFN/IFN-LAMBDAR1/IL-10RBETA RECEPTOR COMPLEX
 
Authors :  J. L. Mendoza, K. M. Jude, K. C. Garcia
Date :  31 Aug 16  (Deposition) - 29 Mar 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Receptor, Cytokine, Cytokine-Cytokine Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Mendoza, W. M. Schneider, H. H. Hoffmann, K. Vercauteren, K. M. Jude, A. Xiong, I. Moraga, T. M. Horton, J. S. Glenn, Y. P. De Jong, C. M. Rice, K. C. Garcia
The Ifn-Lambda-Ifn-Lambda R1-Il-10R Beta Complex Reveals Structural Features Underlying Type Iii Ifn Functional Plasticity.
Immunity V. 46 379 2017
PubMed-ID: 28329704  |  Reference-DOI: 10.1016/J.IMMUNI.2017.02.017

(-) Compounds

Molecule 1 - INTERLEUKIN-10 RECEPTOR SUBUNIT BETA
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Fragment: UNP RESIDUES 20-220
    Gene: IL10RB, CRFB4, D21S58, D21S66
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IL-10RB,CYTOKINE RECEPTOR CLASS-II MEMBER 4,CYTOKINE RECEPTOR FAMILY 2 MEMBER 4,CRF2-4,INTERLEUKIN-10 RECEPTOR SUBUNIT 2, IL-10R2
 
Molecule 2 - INTERFERON LAMBDA RECEPTOR 1
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Strain: HEK 293
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 21-230
    Gene: IFNLR1, IL28RA, LICR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IFN-LAMBDA-R1,CYTOKINE RECEPTOR CLASS-II MEMBER 12,CYTOKINE RECEPTOR FAMILY 2 MEMBER 12,CRF2-12,INTERLEUKIN-28 RECEPTOR SUBUNIT ALPHA,IL-28RA,LIKELY INTERLEUKIN OR CYTOKINE RECEPTOR 2,LICR2
 
Molecule 3 - INTERFERON LAMBDA-3
    Chains: C
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Fragment: UNP RESIDUES 34-195
    Gene: IFNL3, IL28B, IL28C, ZCYTO22
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IFN-LAMBDA-3,CYTOKINE ZCYTO22,INTERLEUKIN-28B,IL-28B, INTERLEUKIN-28C,IL-28C

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:9binding site for Mono-Saccharide NAG B 303 bound to ASN B 9
2AC2SOFTWAREASN B:16binding site for Mono-Saccharide NAG B 302 bound to ASN B 16
3AC3SOFTWAREGLN A:168 , ASN B:122 , ALA B:123 , HIS B:158 , GLY B:159 , PRO B:161binding site for Mono-Saccharide NAG B 301 bound to ASN B 122

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:66 -A:74
2A:188 -A:209
3B:54 -B:62
4B:66 -B:130
5B:175 -B:197
6C:4 -C:103
7C:38 -C:136
8C:155 -C:162

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe C:43 -Pro C:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T5W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T5W)

(-) Exons   (0, 0)

(no "Exon" information available for 5T5W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee..eeeeeee.........eeeeeee....eeeeeeee...eee.........eeeeeeeee..ee...eeeeehhhhhh.....eeeeeee..eeeeeee...........hhhhhh...eeeeeeee......eee.....eee........eeeeeeeeee....ee......eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5t5w A  20 MVPPPENVRMNSVNFKNILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDET 217
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209        


Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..eeeeeee..eeeeeee.......ee..........eee...........eeeeeeee.........ee...eehhhhh.....eeeeeee..eeeeeee...........eeeeeeeee......ee...ee....eeee.......eeeeeeeeeee...eee......eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t5w B   6 PPQNVTLLSQNFSVYLTWLPTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLE 201
                                    15        25|       43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193        
                                              25|                                                                                                                                                                       
                                               34                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.hhhhhhhhhhhhhhhhhhhh...............hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t5w C   4 CHIAQFKSLSPRELQAFKRAKDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLDATADTDPALGDVLDQPLHTLHHILSQLRACIQRGRLHRWLHRLQEAPKKESPGCLEASVTFNLFRLLARDLNCVASGDLCE 163
                                    13        23        33        43        53        63        73        83        93       103 ||    122       132       142       152       162 
                                                                                                                               105|                                                
                                                                                                                                115
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T5W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T5W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T5W)

(-) Gene Ontology  (29, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe C:43 - Pro C:44   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        I10R2_HUMAN | Q08334: 3lqm
        IFNL3_HUMAN | Q8IZI9: 3hhc
        INLR1_HUMAN | Q8IU57: 3og4 3og6 5ixd 5ixi 5l04

(-) Related Entries Specified in the PDB File

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